Genomic Location: NC_064047.1:1765763...1801088
NR annotation: XP_032219397.2, protein mono-ADP-ribosyltransferase PARP4 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5518843 |
| Transcript |
| rna-XM_032363506.2 |
| Protein |
| XP_032219397.2 |
| UniProt accession | Description |
|---|---|
| E9PYK3 | Protein mono-ADP-ribosyltransferase PARP4 OS=Mus musculus OX=10090 GN=Parp4 PE=1 SV=1 |
| Q9UKK3 | Protein mono-ADP-ribosyltransferase PARP4 OS=Homo sapiens OX=9606 GN=PARP4 PE=1 SV=3 |
| Q75WE7 | von Willebrand factor A domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Vwa5a PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002267 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00533 all species → | BRCT | BRCA1 C Terminus (BRCT) domain | Family | Interproscan |
| PF13768 all species → | VWA_3 | von Willebrand factor type A domain | Domain | Interproscan |
| PF00644 all species → | PARP | Poly(ADP-ribose) polymerase catalytic domain | Family | Interproscan |
| PF00022 all species → | Actin | Actin | Family | Interproscan |
| PF08487 all species → | VIT | Vault protein inter-alpha-trypsin domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036616 all species → | Homologous_superfamily | Poly(ADP-ribose) polymerase, regulatory domain superfamily | Interproscan |
| IPR013694 all species → | Domain | VIT domain | Interproscan |
| IPR002035 all species → | Domain | von Willebrand factor, type A | Interproscan |
| IPR043129 all species → | Homologous_superfamily | ATPase, nucleotide binding domain | Interproscan |
| IPR001357 all species → | Domain | BRCT domain | Interproscan |
| IPR004102 all species → | Domain | Poly(ADP-ribose) polymerase, regulatory domain | Interproscan |
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR012317 all species → | Domain | Poly(ADP-ribose) polymerase, catalytic domain | Interproscan |
| IPR031273 all species → | Family | Protein mono-ADP-ribosyltransferase PARP4 | Interproscan |
| IPR036420 all species → | Homologous_superfamily | BRCT domain superfamily | Interproscan |
| IPR004000 all species → | Family | Actin family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46530 all species → | PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003950 all species → | Molecular Function | NAD+-protein poly-ADP-ribosyltransferase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0140289 all species → | Biological Process | obsolete protein mono-ADP-ribosylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10798 | PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 | EC:2.4.2.30 | DNA repair and recombination proteins | ko03400 | deepkoala |
Transcript abundance of XP_032219397.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
