Gene detail

Detailed information of XP_032219601.2 in Nematostella vectensis

Genomic Location: NC_064040.1:10678108...10687429
NR annotation: XP_032219601.2, CST complex subunit STN1 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032363710.2

ttttacCATGTTGTgaatccaacatggcggctAACAATTGTGCGCGAGCGACAAGAAGACATGGCTGAGGCAGATTCGCTGCCTCCAGTGCGATACTGGGGGCTGGATCCACTTTTTTGGATCCACAGAAAGATGTTTATTGTGGAGATTTTGAAGCTTACAGAGATATCTGAATATAAAGGATTTTATGCAATAAACAGACACCCTTTTTCTCGGGTCGAGATTGTGGGATACGTTATCAGTTTGCACGAAAGAGAACGACTTATTACTTATGGAGTGGATGATGGCTCAGGGTCTATTGACTGCTGTCAGTGGCAAAAAGACGACCCAGATGAAGACAGAATCACGTTAGAGCTTGGAGAACTCATCTGTGTTCAGGGAAAAATCACAGCTTTTCGTGAAAAACGTCAGATCACAGTAGATTTTATTTACCCTCTAGAGGATAAAAATTCAGAAGTACTTTTCTGGTTAGATGTGCTACATCTCCGTAAAACAGTCTACAGTAAACCCTTTAATCCCTCTGGGGAGTTGAATAGCTCTGAGGGATCATTGCCCACCCTCAAAGACCTCGCCCAGCATATAAGGGGACTTTTGAAGGATGGGAATATTGGATTTAGAAGTATCTGTTCTCAGAAGAAAGTTCAGGAATTAGCAGAATTGGTTCAAGTCACTGGAGATGGGACAAAGGTTGACTCAAACTCAACTGCTACGACCATCAGAAAAGCTTTAAGGCTCTTGGAAAAGGATGGTGCGATATACCACAGAGATGCCTCTGATAACTATGAGGTCATAACTCATTCAAAGCATTTGGCTCCTGCCATACTTAATATTGTACAGCATTGCACTAAAgATTCCCCAGTCGAAGGGGTCCACTTCACAAGAATACAAGACGGCGTTCGCTCGAGTCATAAGTTTCGTCATGTCACCCGGGATCAGATCATGCATTCCCTACATCTGTTAGTCTGCGATAGTGAACTATTCCAGCCACAAGACAGGTTTTATTGTTTGCTCACTTGACAAAACCCAGGTCAAGTCTGCGTAATACCGtttggtttatttttaatatcgGAAACTTTGGAAAATGTGAATATtttggaaaaatataaatatgtaAATGTACAAAATCGACCTAATAGATCGGCGTGTATAGATCAACCTTTTCTTAGATTTCCTTTATTTGGCGTAGCGTTTTAGGAGCACCTGGTTGCCGAGCGAATATCGAAAGATTAACGCGAATGTGTCACGAGTGTGAGCCGAGATCCCGGGTAAAATGTTCGGTTTCCCCGACTCTTCGCCGAGCGCAGAATGTTATTTGATGTAGACACAAACGCGCATCGTGCATCAAGACTTCTAATGGAAAGTGGGTTTACGCGTTGCTACTAATAATGACTATAGTCATTACATGCGATTATATTGATAATTGCGCAACATAAttacaataaattattatGATTACTGTATGCTTGTTACTCTAGTTTTATTCGTTCGGTAGTCTACGTATCTCCTGGCTTTGTTGGGTTTCAGGGCAGGTTTTGCTAGTTTTTGTATATCCACGGGAGAGCTAGCGCAATTGTAAGGGGCGCCCCGAGCGAGGTCATGGGCGGGCCGGAAAAAACAAACGGGAAAAATCGCCCGCCACCGACCCCATGACAATCTGAGTCGCCGGGTGTGAAGTCTCCCCTTGCAGCCGTTCTGGACTCGTCGCGCTAGACGGCGCTCAAATCCCAGTTACTGGACTAGTTACTAGACTACCGTGTGTGGCGAGCGCGTGTTCAATGTCAAAAGGCTATCGAATCGTTGTGTTTTcgcgaataaaaaaaaactgctctGAAACACAACAAATTAAAACCGCCAGCTACGCAGACTATCCGTTCGACTACCTTAACAGCAGGTAGACCAAAGCAAGTGCTTTGTCATGCCTTTGAAACTCCAACTTTTAATTCCCAATCTGGTAAAGATGTCAAAgattgaaaaaatattatataacagtaagAAAACTATGGCGaatgttgtaaaaaaaaaagacaaaatcacGCTCAAGAGAGATTTGATagcttttgatattttattgtaGAGACAACTGATTTTGTAAGAAGGATAAATAAAAATGCCGCTTTAAATGTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AYD2	CST complex subunit STN1 OS=Rattus norvegicus OX=10116 GN=Stn1 PE=2 SV=1
Q8K2X3	CST complex subunit STN1 OS=Mus musculus OX=10090 GN=Stn1 PE=1 SV=2
D2GXY4	CST complex subunit STN1 OS=Ailuropoda melanoleuca OX=9646 GN=STN1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007414 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10451 all species →	Stn1	Telomere regulation protein Stn1	Domain	Interproscan
PF09170 all species →	STN1_2	CST, complex subunit STN1, C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR040260 all species →	Family	Replication factor A protein-like	Interproscan
IPR018856 all species →	Domain	CST complex subunit Stn1, N-terminal	Interproscan
IPR015253 all species →	Domain	Stn1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13989 all species →	REPLICATION PROTEIN A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005662 all species →	Cellular Component	DNA replication factor A complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23312	STN1; CST complex subunit STN1	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032219601.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

39TPM > 0

16Conditions

10.2Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	5.31	6.26
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	4.76	6.31
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	4.06	4.16
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	3.53	3.90
whole 6 week old aboral regenerate · regenerate uncut	3	3	4.84	5.06
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	2.18	4.19
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.43	5.15
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	4.83	5.56
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	3.26	5.87
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	4.89	6.73
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	4.59	4.89
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	7.24	10.22
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	3.98	6.38
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	2.09	6.28
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	3.85	5.88
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.63	4.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.26
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.98
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.69
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.31
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.08
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.89
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.16
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.13
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.89
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.90
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.73
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.95
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.06
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.74
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.72
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.19
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.35
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.15
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.14
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.56
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.58
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.36
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.87
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.92
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.73
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	4.56
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.37
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.89
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.65
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.24
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.22
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.12
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	5.39
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.38
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.56
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.28
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.88
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.67
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.89
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.