Detailed information of XP_032219804.2 in Nematostella vectensis

Genomic Location: NC_064034.1:7025670...7050945
NR annotation: XP_032219804.2, sarcolemmal membrane-associated protein isoform X3 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q28623Sarcolemmal membrane-associated protein OS=Oryctolagus cuniculus OX=9986 GN=SLMAP PE=1 SV=2
Q14BN4Sarcolemmal membrane-associated protein OS=Homo sapiens OX=9606 GN=SLMAP PE=1 SV=1
Q3URD3Sarcolemmal membrane-associated protein OS=Mus musculus OX=10090 GN=Slmap PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002401 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00498
all species →
FHAFHA domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008984
all species →
Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR000253
all species →
DomainForkhead-associated (FHA) domainInterproscan
IPR051176
all species →
FamilyCentrosomal and Immune Signaling ModulatorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15715
all species →
CENTROSOMAL PROTEIN OF 170 KDAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_032219804.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032219804.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
42TPM > 0
16Conditions
34.4Max TPM
20.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 3 23.35 25.20
whole 6 week old aboral regenerate · regenerate 144hpa 3 3 20.36 23.62
whole 6 week old aboral regenerate · regenerate 0hpa 3 3 23.90 25.25
whole 6 week old aboral regenerate · regenerate 2hpa 3 3 19.97 22.63
whole 6 week old aboral regenerate · regenerate uncut 3 3 21.16 22.52
whole 6 week old aboral regenerate · regenerate 4hpa 3 2 17.12 33.32
whole 6 week old aboral regenerate · regenerate 120hpa 3 3 27.54 34.40
whole 6 week old aboral regenerate · regenerate 36hpa 3 3 25.31 29.61
whole 6 week old aboral regenerate · regenerate 24hpa 3 2 15.58 24.15
whole 6 week old aboral regenerate · regenerate 20hpa 3 3 22.96 26.03
whole 6 week old aboral regenerate · regenerate 16hpa 3 3 23.59 25.61
whole 6 week old aboral regenerate · regenerate 72hpa 3 2 15.88 24.82
whole 6 week old aboral regenerate · regenerate 60hpa 3 3 23.83 25.25
whole 6 week old aboral regenerate · regenerate 48hpa 3 2 14.91 25.86
whole 6 week old aboral regenerate · regenerate 8hpa 3 3 22.30 23.14
whole 6 week old aboral regenerate · regenerate 12hpa 3 1 7.40 22.20

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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