Genomic Location: NC_064043.1:10190609...10205150
NR annotation: XP_032219956.2, uncharacterized protein LOC5519269 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5519269 |
| Transcript |
| rna-XM_032364065.2 |
| Protein |
| XP_032219956.2 |
| UniProt accession | Description |
|---|---|
| Q6P1D7 | Structure-specific endonuclease subunit SLX4 OS=Mus musculus OX=10090 GN=Slx4 PE=1 SV=1 |
| Q8IY92 | Structure-specific endonuclease subunit SLX4 OS=Homo sapiens OX=9606 GN=SLX4 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003644 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 adaptor Cullin RING|BTB · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09494 all species → | Slx4 | Slx4 endonuclease | Domain | Interproscan |
| PF00651 all species → | BTB | BTB/POZ domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018574 all species → | Family | Structure-specific endonuclease subunit Slx4 | Interproscan |
| IPR000210 all species → | Domain | BTB/POZ domain | Interproscan |
| IPR011333 all species → | Homologous_superfamily | SKP1/BTB/POZ domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21541 all species → | BTB POZ DOMAIN CONTAINING 12 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0033557 all species → | Cellular Component | Slx1-Slx4 complex | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000712 all species → | Biological Process | resolution of meiotic recombination intermediates | Interproscan |
XP_032219956.2.Transcript abundance of XP_032219956.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 6.48 | 6.94 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 5.04 | 6.58 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 2.83 | 3.15 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 4.28 | 5.37 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 4.48 | 5.93 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 2 | 3.69 | 5.57 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 2 | 4.40 | 7.26 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 6.49 | 7.92 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 2 | 3.45 | 6.03 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 2 | 3.24 | 5.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 4.18 | 4.87 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 3 | 6.78 | 7.51 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 6.58 | 7.22 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 2 | 4.51 | 8.32 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 2 | 4.34 | 6.85 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 1 | 1.56 | 4.67 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.