Detailed information of XP_032219956.2 in Nematostella vectensis

Genomic Location: NC_064043.1:10190609...10205150
NR annotation: XP_032219956.2, uncharacterized protein LOC5519269 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P1D7Structure-specific endonuclease subunit SLX4 OS=Mus musculus OX=10090 GN=Slx4 PE=1 SV=1
Q8IY92Structure-specific endonuclease subunit SLX4 OS=Homo sapiens OX=9606 GN=SLX4 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003644 (this species only) · gene tree & orthology
Ubiquitin familyE3|E3 adaptor Cullin RING|BTB · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09494
all species →
Slx4Slx4 endonucleaseDomainInterproscan
PF00651
all species →
BTBBTB/POZ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018574
all species →
FamilyStructure-specific endonuclease subunit Slx4Interproscan
IPR000210
all species →
DomainBTB/POZ domainInterproscan
IPR011333
all species →
Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21541
all species →
BTB POZ DOMAIN CONTAINING 12Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006260
all species →
Biological ProcessDNA replicationInterproscan
GO:0006281
all species →
Biological ProcessDNA repairInterproscan
GO:0033557
all species →
Cellular ComponentSlx1-Slx4 complexInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0000712
all species →
Biological Processresolution of meiotic recombination intermediatesInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_032219956.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032219956.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
40TPM > 0
16Conditions
8.3Max TPM
4.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 3 6.48 6.94
whole 6 week old aboral regenerate · regenerate 144hpa 3 3 5.04 6.58
whole 6 week old aboral regenerate · regenerate 0hpa 3 3 2.83 3.15
whole 6 week old aboral regenerate · regenerate 2hpa 3 3 4.28 5.37
whole 6 week old aboral regenerate · regenerate uncut 3 3 4.48 5.93
whole 6 week old aboral regenerate · regenerate 4hpa 3 2 3.69 5.57
whole 6 week old aboral regenerate · regenerate 120hpa 3 2 4.40 7.26
whole 6 week old aboral regenerate · regenerate 36hpa 3 3 6.49 7.92
whole 6 week old aboral regenerate · regenerate 24hpa 3 2 3.45 6.03
whole 6 week old aboral regenerate · regenerate 20hpa 3 2 3.24 5.00
whole 6 week old aboral regenerate · regenerate 16hpa 3 3 4.18 4.87
whole 6 week old aboral regenerate · regenerate 72hpa 3 3 6.78 7.51
whole 6 week old aboral regenerate · regenerate 60hpa 3 3 6.58 7.22
whole 6 week old aboral regenerate · regenerate 48hpa 3 2 4.51 8.32
whole 6 week old aboral regenerate · regenerate 8hpa 3 2 4.34 6.85
whole 6 week old aboral regenerate · regenerate 12hpa 3 1 1.56 4.67

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP