Detailed information of XP_032220193.2 in Nematostella vectensis

Genomic Location: NC_064046.1:11396572...11420542
NR annotation: XP_032220193.2, E3 ubiquitin-protein ligase MARCHF6 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6ZQ89E3 ubiquitin-protein ligase MARCHF6 OS=Mus musculus OX=10090 GN=Marchf6 PE=2 SV=2
O60337E3 ubiquitin-protein ligase MARCHF6 OS=Homo sapiens OX=9606 GN=MARCHF6 PE=1 SV=2
Q5R9W1E3 ubiquitin-protein ligase MARCHF6 OS=Pongo abelii OX=9601 GN=MARCHF6 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005387 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12906
all species →		RINGvRING-variant domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011016
all species →		DomainZinc finger, RING-CH-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13145
all species →		SSM4 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0030176
all species →		Cellular Componentobsolete integral component of endoplasmic reticulum membraneInterproscan
GO:0030433
all species →		Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10661MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032220193.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
0TPM > 0
16Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 144hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 0hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 2hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate uncut 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 4hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 120hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 36hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 24hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 20hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 16hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 72hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 60hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 48hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 8hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 12hpa 3 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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