Genomic Location: NC_064045.1:14167963...14299759
NR annotation: XP_032221024.2, uncharacterized protein LOC5520178 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5520178 |
| Transcript |
| rna-XM_032365133.2 |
| Protein |
| XP_032221024.2 |
| UniProt accession | Description |
|---|---|
| Q0V8T5 | Contactin-associated protein like 5-2 OS=Rattus norvegicus OX=10116 GN=Cntnap5b PE=2 SV=1 |
| Q0V8T7 | Contactin-associated protein like 5-3 OS=Mus musculus OX=10090 GN=Cntnap5c PE=2 SV=1 |
| Q0V8S9 | Contactin-associated protein-like 5 OS=Gallus gallus OX=9031 GN=CNTNAP5 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001112 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00754 all species → | F5_F8_type_C | F5/8 type C domain | Domain | Interproscan |
| PF13385 all species → | Laminin_G_3 | Concanavalin A-like lectin/glucanases superfamily | Domain | Interproscan |
| PF07974 all species → | EGF_2 | EGF-like domain | Domain | Interproscan |
| PF00094 all species → | VWD | von Willebrand factor type D domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR002049 all species → | Domain | Laminin-type EGF domain | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR001846 all species → | Domain | von Willebrand factor, type D domain | Interproscan |
| IPR001774 all species → | Domain | Delta/Serrate/lag-2 (DSL) protein | Interproscan |
| IPR009030 all species → | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR000421 all species → | Domain | Coagulation factor 5/8 C-terminal domain | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR013111 all species → | Domain | EGF-like domain, extracellular | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR31513 all species → | EPHRIN TYPE-B RECEPTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007154 all species → | Biological Process | cell communication | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
XP_032221024.2.Transcript abundance of XP_032221024.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 2.54 | 3.04 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 2.26 | 2.58 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 2.18 | 2.53 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 2.10 | 2.41 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 2.25 | 2.78 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 2 | 1.45 | 2.89 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 3 | 2.67 | 2.86 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 1.36 | 1.45 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 2 | 0.88 | 1.41 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 1.98 | 2.28 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 2.05 | 2.43 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 3 | 2.67 | 3.92 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 1.86 | 2.08 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 2 | 1.17 | 1.97 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 3 | 2.01 | 2.24 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 2 | 1.28 | 1.97 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
