Genomic Location: NC_064045.1:13777222...13801605
NR annotation: XP_032221083.2, nuclear receptor coactivator 1 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5520243 |
| Transcript |
| rna-XM_032365192.2 |
| Protein |
| XP_032221083.2 |
| UniProt accession | Description |
|---|---|
| P41738 | Aryl hydrocarbon receptor OS=Rattus norvegicus OX=10116 GN=Ahr PE=1 SV=2 |
| P35869 | Aryl hydrocarbon receptor OS=Homo sapiens OX=9606 GN=AHR PE=1 SV=2 |
| Q8R4S6 | Aryl hydrocarbon receptor OS=Mus musculus castaneus OX=10091 GN=Ahr PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009664 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00010 all species → | HLH | Helix-loop-helix DNA-binding domain | Domain | Interproscan |
| PF00989 all species → | PAS | PAS fold | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050933 all species → | Family | Circadian Clock Transcription Factors | Interproscan |
| IPR011598 all species → | Domain | Myc-type, basic helix-loop-helix (bHLH) domain | Interproscan |
| IPR035965 all species → | Homologous_superfamily | PAS domain superfamily | Interproscan |
| IPR000014 all species → | Domain | PAS domain | Interproscan |
| IPR036638 all species → | Homologous_superfamily | Helix-loop-helix DNA-binding domain superfamily | Interproscan |
| IPR013767 all species → | Domain | PAS fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23042 all species → | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0034751 all species → | Cellular Component | aryl hydrocarbon receptor complex | Interproscan |
| GO:0046983 all species → | Molecular Function | protein dimerization activity | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
XP_032221083.2.Transcript abundance of XP_032221083.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
