Gene detail

Detailed information of XP_032221182.2 in Nematostella vectensis

Genomic Location: NC_064034.1:9771132...9787565
NR annotation: XP_032221182.2, protein patched homolog 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5520323

ATGCCTCTTTCAACTTCGGAGAGCTACGTTTGGGCCAGCGAGTCCTTGAGAGATATAACTGAGGGTCGCGCCAAAGGGAATCGTTTAGCACTAGTTGTTCGCGCTCGCGTCCAACTTCTCCTCTTCACTATAGGCTGTAATGCTCAGAAGCACTGCGGAAAAGTCGTGTTGTTGGGAATCGTTGCGATGTGCGTGTGTGGGATAGGCCTGGACCGCATTCAGATGGAGACAAATGCCGAAAAACTCTGGGTTGAAGCTGGTGGCAGACTAGAAGAGGAACTAGCCTACACCAAAGGTGCCTTGGGGGAGGGGTTTGGAGCATCACAGGAGCTGATAATCCAAACCCCTAACATTGAAGGGACTAATATCCTTACTCCAAATGCACTGTTACTTCACCTAGAGGCTGTACGGAAAGCCACTAAAGTCACAGTTACTATTGACAACAAGAAATGGACTCTTAAAGAACTCTGCTATGCACCCAATCTTCCTGAGATAGAAAACAAAGCACTAAGACCAATATTTGATCTGCTGGTTCCTTGCGCCATCATTTCACCATTGGACTGCTTCTGGGAAGGTGCAAAGATTCATGGTCCAGAAAAGAACATTTCTTTCACGCCTGAGAAGAAGCTTCTAAAGTGGACAACTTTGAATCCGATTGGCTTGCTAGACTTGCTAAAAATTGGCCTGGACATTTTCCATAACAGAGAATATGAGACAATTCGTACCATGTTTAAAGAGGCTGGAATTACGAGCGGGTACACAGAAAAGCCATGCCTCAATCCAAATGACCGAGAGTGTCCGCGAACAGCTCCTAACTATAGATCAAAAGAGGCATTGGATATTGGTGCCTCCATAACAGATGGCTGCACTGGCTTTGCAGCCAAATACATGAAATGGCCTGAGGAGCTGATTGCTGGTGGAGTGAAGAAGAATCGCTCTGGGACTATAAGAAGTGCTGGGGCCCTTCAGAGTATCATTCTCCTGATGGGACCACAGAACATGCAGAGGTATTACCAGGACAATGATGGTCAAGATCTTAGTACTGAGAAAGCGACACAGATCTTAGAGGCGTGGCAACGACAGTTCTCCAAGGTGATGAATGCTGAGAGCAGTAGGGTCACGGATGAAGACTCCACTGTCCTGGCCTTCACCTCTACTGCCTTCAATGACCTACTGAAGGATTTCTCCAAGTCAAGCACTGTGCAGCTAGCCATAGGCTATATTATAATGGTATTGTATGCTGGCTGGTCTTTGAAGCGGTGGACGAATGGGGTTCAGTCCCATGGGGGTCTGGGTGTGGCCGGGGTGATACTGGTCACCCTATCTGTGGTGGCGGGAATGGGGTTATGCTCCTTTTGTGGGATTGCTTTTAATGCCGCCTCAACACAGGTCCTGCCCTTCCTGGCCCTAGGTCTTGGAGTGGACGACATGTTCCTGATAGCGCATACCTATGCTGCCATGAGCGATATCCACCCATCGGACCAAGTTGGCTATGCCCTGGGTAGCGCTGGTGTCAGTGTTCTTCTGACCTCGTTCAACAACATGGTGGCCTTCCTTATGGCTGCTATCATCCCCATCCCGGCACTGCGAGCCTTCTCTATACAGGCTGCTGTGATTGTAGTGTTCAATTACCTCGCGGTGACTATCGTCTTTCCCGCCATGATCGCCATTGACGTGAAGCGCAAACAGGACCAGCGATACGACCTCCTCTGCTGTTTCTCCAAGACTGTCCCGCAAAGGATCTCGGTCACACCCGACCTATCTACAGACACAGGCGTAGTCGTGCGTAGGTACAACAACTCGTGCAGCTCCCTCAGCTCTCAGAACTCCACAGCAGCTCAACCCCCGTATATAGGGGCCTCTCAGCTTCCTAGTATAGGGGCGGTGGTGACGGCTAATGGGACAATCTCCCTACCTGGGGCCGTCACTGTGCACGCCGCTGCCTTTGCCGAGCTAGGCCCCAAGACCGTTTACAACACGTTATTACCGCTATCGGTTTCTGAACTCAATAACCAGACAACCCAGAGCATGGTTATTACAGGCAACAACCGCGAGGGGCAATTTACGCTAGGGGCCTACGGCGGCCGACGGAACTACGGCAATAATGCGCTCGAGTTTGAGCCTTCTAGAGACAATATCTCAGAGATTGATCTGGGTTCGGGTAATGACAGAGGGAAGAGACAGTCATCTGGAAACAAAGACGTTAACCAGAACTCTAGCACTACCGATGGCAAATCGAACAGCCGAGGATCGCCGAGTGGGTCTAGGGCGGCGTTTGAGAAGAAGTCGTCGAGATGCGAAAGGAAGCATGGAAGATGGCATTGGCTGAAGCATTTGTCGTTAGAGCACTTTGCTGATCATTACTACGGGCCGTGCCTTCAGAAGAACTCAACCAAGATCCTTGTGCTGTTCATGTTCGCCGCCATGTTTGGTGCAGGGGTCTATGGCTGTATGCTAGTCCGTGACGGCCTTGATCTGATGGACGTCGTACCCCGTAACACGACCGAGCACAAGTTTGTGGACGCCCAATCCAAATACTTCTCATACTACATTATGTACGCCGTCACCAAGGAATATGACTATCCCAATGGACAGAAGCTCATGTACAAGTACCATGAGGCCTTTAGCCGGGTGAGAAACATAATCAAGTCTCCAGATATCAAGACCCAGCCGTTCTGGTTGATTTATTTTCGCGATTGGTTAAAGGACATGCAGCAAGCATTTGACTCTGACTGGTCCACTGGATGTGTAACGTACGAGGGGTGGCGCGAGAACGCTAGTGATTATGGTATCCTCGGCTACAAGCTCCTCTCCCAGACCGGAAACCCGGACATGCCCATCAACCGGACACAGGTGCGGTCCATCCGACTTGTGGATGAGTCTGGAATTATCCGACCAGCTAGCTTCTACAATTATCTAACTGCGTGGATGAATGTTGATACTATGGGGTACACTGCTTCACAGGCTTTTATCAAACCGGAAGCCGTAAACTGGTACAACCTGCGTGACGTCCGGGAACAACATTCTATGCGCATGGAAGCAGCGAAGCCGATTACATTCGCCCAACTGCCGTTTGACTTGTTTCATCTAAAAACAACAGAAGATATCGTCCAAACAATCAAGGAGGTGCGTAAGATCTGTGACGAGTTCCAGGCGGCTGGTCTCCCTTCTTATCCAAGTGGGATCCCATTCACCTTCTGGGAACAGTACATCATGCTGCGTCAACACCTCATGGTCGCCATCATCATCGTGCTTGGCATCACCTTCATTGTGATCGCGGGCTTCTTGTGGAGCGTCTGGACGGCTATCATTATAGACCTGACGCTGGTCATGATAACGGTCCAGTTGTTTGGATTCATGGGTTTGGCAGGAATCAAGCTCAGCGCTGTCCCAGCCGTGACCCTCATCCTATCCGTGGGGGTAGGGGTGGAGTTCACTGTCCATATGTGCATGGCGTTCCTTACGTCCACAGGGGATCGTAACCACCGCATGCAGACGGCCATTGAGCACGTGTTTACCCCCATCGTGGACGGCGCGGTATCGACGCTGCTCGGTGTCATCATGCTCGCGGGCTCAGAGTTTGACTTTATTGTAAGGTATTTTTTCCACCTTCTTGCCGCCCTGATTGTCATCGGCAGTCTCAACGGCTTAATGTTTCTCCCAGTTCTTCTTTCTTTTGCGGGACCTCATCCAGAGGTTGAGGAATTACGAGCCCCCGGTACTGCATCATCGGCGGGCTCTCAGCGTGAGCTTCTTCCCAGAAGCAGTTGCAGGCGTGGTACGCCACCCACAGACTCGCAGCTGTGCATACTTGACGCGAACACAGAAAACGTGCACGATGAGCACTCGAACTCTCGCGGGCGCAGAAAGCACCGCAAGACGCGGAATAACCGCGTCCCTCGCGCCAATGCGAGCTCGCACATTGACTCAGACTCGTCTAGTTCCACAGTTACTCGAGTCACCGCGACAGCTACGGTCACTGTGGAGGTTCTTAGGGAGCAACTCGCAGGAACACGGCGCATTCAACCCGCGCGAGATACGGGACGCCCGCGGGATGCGGGACGCTCAGTACGGGACGAACACTGTCGAGTCGAGATCACAGACCTTGATCTTCAGGAAGGTGACAATGTGAGATGA

Transcript

rna-XM_032365291.2

TCCTGTGTCCCGACTGGTGCTCATGTTACAACTCGCTCTCTCTCATGTGAGTGTCGTTGCTTATTACCGCACCGTGAACCATGATTTCTGGCCTAAATGGCAAGCGTTTGGGTCCGGGATCAGACAAAAGATTTAGTGGATTGCTTAAGGGACTGGCTTAAGTGGAGAACAGGCAAGCGTAAAGGGGAAATAAGGCAGTATTTGTCTGGTATATCACTCGACCTGAGGCATTCGCCGCGTGGCTGTTCGAATTCAAGTCATCCTAACCAAACATGCCTCTTTCAACTTCGGAGAGCTACGTTTGGGCCAGCGAGTCCTTGAGAGATATAACTGAGGGTCGCGCCAAAGGGAATCGTTTAGCACTAGTTGTTCGCGCTCGCGTCCAACTTCTCCTCTTCACTATAGGCTGTAATGCTCAGAAGCACTGCGGAAAAGTCGTGTTGTTGGGAATCGTTGCGATGTGCGTGTGTGGGATAGGCCTGGACCGCATTCAGATGGAGACAAATGCCGAAAAACTCTGGGTTGAAGCTGGTGGCAGACTAGAAGAGGAACTAGCCTACACCAAAGGTGccttgggggaggggtttgGAGCATCACAGGAGCTGATAATCCAAACCCCTAACATTGAAGGGACTAATATCCTTACTCCAAATGCACTGTTACTTCACCTAGAGGCTGTACGGAAAGCCACTAAAGTCACAGTTACTATTGACAACAAGAAATGGACTCTTAAAGAACTCTGCTATGCACCCAATCTTCCTGAGATAGAAAACAAAGCACTAAGACCAATATTTGATCTGCTGGTTCCTTGCGCCATCATTTCACCATTGGACTGCTTCTGGGAAGGTGCAAAGATTCATGGTCCAGAAAAGAACATTTCTTTCACgCCTGAGAAGAAGCTTCTAAAGTGGACAACTTTGAATCCGATTGGCTTGCTAGACTTGCTAAAAATTGGCCTGGACATTTTCCATAACAGAGAATATGAGACAATTCGTACCATGTTTAAAGAGGCTGGAATTACGAGCGGGTACACAGAAAAGCCATGCCTCAATCCAAATGACCGAGAGTGTCCGCGAACAGCTCCTAACTATAGATCAAAAGAGGCATTGGATATTGGTGCCTCCATAACAGATGGCTGCACTGGCTTTGCAGCCAAATACATGAAATGGCCTGAGGAGCTGATTGCTGGTGGAGTGAAGAAGAATCGCTCTGGGACTATAAGAAGTGCTGGGGCCCTTCAGAGTATCATTCTCCTGATGGGACCACAGAACATGCAGAGGTATTACCAGGACAATGATGGTCAAGATCTTAGTACTGAGAAAGCGACACAGATCTTAGAGGCGTGGCAACGACAGTTCTCCAAGGTGATGAATGCTGAGAGCAGTAGGGTCACGGATGAAGACTCCACTGTCCTGGCCTTCACCTCTACTGCCTTCAATGACCTACTGAAGGATTTCTCCAAGTCAAGCACTGTGCAGCTAGCCATAGGCTATATTATAATGGTATTGTATGCTGGCTGGTCTTTGAAGCGGTGGACGAATGGGGTTCAGTCCCATGGGGGTCTGGGTGTGGCCGGGGTGATACTGGTCACCCTATCTGTGGTGGCGGGAATGGGGTTATGCTCCTTTTGTGGGATTGCTTTTAATGCCGCCTCAACACAGGTCCTGCCCTTCCTGGCCCTAGGTCTTGGAGTGGACGACATGTTCCTGATAGCGCATACCTATGCTGCCATGAGCGATATCCACCCATCGGACCAAGTTGGCTATGCCCTGGGTAGCGCTGGTGTCAGTGTTCTTCTGACCTCGTTCAACAACATGGTGGCCTTCCTTATGGCTGCTATCATCCCCATCCCGGCACTGCGAGCCTTCTCTATACAGGCTGCTGTGATTGTAGTGTTCAATTACCTCGCGGTGACTATCGTCTTTCCCGCCATGATCGCCATTGACGTGAAGCGCAAACAGGACCAGCGATACGACCTCCTCTGCTGTTTCTCCAAGACTGTCCCGCAAAGGATCTCGGTCACACCCGACCTATCTACAGACACAGGCGTAGTCGTGCGTAGGTACAACAACTCGTGCAGCTCCCTCAGCTCTCAGAACTCCACAGCAGCTCAACCCCCGTATATAGGGGCCTCTCAGCTTCCTAGTATAGGGGCGGTGGTGACGGCTAATGGGACAATCTCCCTACCTGGGGCCGTCACTGTGCACGCCGCTGCCTTTGCCGAGCTAGGCCCCAAGACCGTTTACAACACGTTATTACCGCTATCGGTTTCTGAACTCAATAACCAGACAACCCAGAGCATGGTTATTACAGGCAACAACCGCGAGGGGCAATTTACGCTAGGGGCCTACGGCGGCCGACGGAACTACGGCAATAATGCGCTCGAGTTTGAGCCTTCTAGAGACAATATCTCAGAGATTGATCTGGGTTCGGGTAATGACAGAGGGAAGAGACAGTCATCTGGAAACAAAGACGTTAACCAGAACTCTAGCACTACCGATGGCAAATCGAACAGCCGAGGATCGCCGAGTGGGTCTAGGGCGGCGTTTGAGAAGAAGTCGTCGAGATGCGAAAGGAAGCATGGAAGATGGCATTGGCTGAAGCATTTGTCGTTAGAGCACTTTGCTGATCATTACTACGGGCCGTGCCTTCAGAAGAACTCAACCAAGATCCTTGTGCTGTTCATGTTCGCCGCCATGTTTGGTGCAGGGGTCTATGGCTGTATGCTAGTCCGTGACGGCCTTGATCTGATGGACGTCGTACCCCGTAACACGACCGAGCACAAGTTTGTGGACGCCCAATCCAAATACTTCTCATACTACATTATGTACGCCGTCACCAAGGAATATGACTATCCCAATGGACAGAAGCTCATGTACAAGTACCATGAGGCCTTTAGCCGGGTGAGAAACATAATCAAGTCTCCAGATATCAAGACCCAGCCGTTCTGGTTgatttattttcgcgattggTTAAAGGACATGCAGCAAGCATTTGACTCTGACTGGTCCACTGGATGTGTAACGTACGAGGGGTGGCGCGAGAACGCTAGTGATTATGGTATCCTCGGCTACAAGCTCCTCTCCCAGACCGGAAACCCGGACATGCCCATCAACCGGACACAGGTGCGGTCCATCCGACTTGTGGATGAGTCTGGAATTATCCGACCAGCTAGCTTCTACAATTATCTAACTGCGTGGATGAATGTTGATACTATGGGGTACACTGCTTCACAGGCTTTTATCAAACCGGAAGCCGTAAACTGGTACAACCTGCGTGACGTCCGGGAACAACATTCTATGCGCATGGAAGCAGCGAAGCCGATTACATTCGCCCAACTGCCGTTTGACTTGTTTCATCTAAAAACAACAGAAGATATCGTCCAAACAATCAAGGAGGTGCGTAAGATCTGTGACGAGTTCCAGGCGGCTGGTCTCCCTTCTTATCCAAGTGGGATCCCATTCACCTTCTGGGAACAGTACATCATGCTGCGTCAACACCTCATGgtcgccatcatcatcgtgCTTGGCATCACCTTCATTGTGATCGCGGGCTTCTTGTGGAGCGTCTGGACGGCTATCATTATAGACCTGACGCTGGTCATGATAACGGTCCAGTTGTTTGGATTCATGGGTTTGGCAGGAATCAAGCTCAGCGCTGTCCCAGCCGTGACCCTCATCCTATCCGTGGGGGTAGGGGTGGAGTTCACTGTCCATATGTGCATGGCGTTCCTTACGTCCACAGGGGATCGTAACCACCGCATGCAGACGGCCATTGAGCACGTGTTTACCCCCATCGTGGACGGCGCGGTATCGACGCTGCTCGGTGTCATCATGCTCGCGGGCTCAGAGTTTGACTTTATTGTAAGGTATTTTTTCCACCTTCTTGCCGCCCTGATTGTCATCGGCAGTCTCAACGGCTTAATGTTTCTCCCAgttcttctttcttttgcGGGACCTCATCCAGAGgTTGAGGAATTACGAGCCCCCGGTACTGCATCATCGGCGGGCTCTCAGCGTGAGCTTCTTCCCAGAAGCAGTTGCAGGCGTGGTACGCCACCCACAGACTCGCAGCTGTGCATACTTGACGCGAACACAGAAAACGTGCACGATGAGCACTCGAACTCTCGCGGGCGCAGAAAGCACCGCAAGACGCGGAATAACCGCGTCCCTCGCGCCAATGCGAGCTCGCACATTGACTCAGACTCGTCTAGTTCCACAGTTACTCGAGTCACCGCGACAGCTACGGTCACTGTGGAGGTTCTTAGGGAGCAACTCGCAGGAACACGGCGCATTCAACCCGCGCGAGATACGGGACGCCCGCGGGATGCGGGACGCTCAGTACGGGACGAACACTGTCGAGTCGAGATCACAGACCTTGATCTTCAGGAAGGTGACAATGTGAGATGAGCATTTCGGAGCATGCGAGGGAATCATGCAAGGGAATCTATCGTCTATGGCGCTTGCCATAAATATCAAGTGCTCGACCCTCTGGAATGGTGTCGGATTGGAGTGCTGGAAAATTCGCACTGAAGTAGGTATATCGAGGTAGAAACCAAGTTTGACTTGTTCAACTAAAACCCAGGGTGGTATCCCAGAGCATGAGAGATTACTGGAATCGGGCGCGTTAACATGTGTGCTACGAATCGGTATGTGCGCAGGGAGACACTGGACTCGGAAATGTGCGGAATGTATTGGTCCTGGAGACAGCATAAAAATTACTGCGTTCAACAACATGTGCGGGTTAATGAAAAAGTTACAAAAAATGAAACCAAGAATGAAACCAAGAATGAACCAAGTGCTGGTTTGTTAGCAGTAAAGAGAGACACGTTACAATAAGACTGGCGTTATGGAGTTAAGTCACTGAACGAAGTGACCGCTCAAGGCTGGctcacactagcgacatagcGACATAACATCGCGCCCTTATGTCCTTATATAACGACattgacataacgacataagaaaagaaaaacatgttatTTGTCCTATGCCGTTATGTCTCTGTCGTTATGTCATTATTTTGAACCATTCACAGTTTGAACATAGGAAATAAGTGTCCGTTACgtcgttatgtcgctagtgtgaaCCAGCCTTAAAAGCTACGCTACATTTTGCGTATATATAATTTATAGTTttgtataaaaacaaaaagccaaCGAGAGACACTCCGTCAGCTGAATCATGATTAATGATGGGACGTTTACTGTTGAATTCCAGGGATAGTATTTTGAAGGTTTATATTTAAGTTGCCTTTTATTTCCAAAGCACTGCTGTCTGTATAACGCTTCTAATAGAAATTTCAGTAGCATCGAACGTTTCTTTTACCAGGCTGTTTATATGGGTTAATATGGTTTCAGACGGTTTTGTCAGTATGAACAAATGAAGTTTTCTGATATATGATGAGTAAAGCTACAACTTGGCTGACTACGAGATATAACAGACaatcttgttttctttctaatatataataattagCAATTTGAATTAGCCATGGCCAATGTATATTTATCAATTGAAATTGAAACGATGCTACGCTTGTCTGGATGCCGTTTGTGTACTGCTTTGCGATACatgtttctctttttttcgtAAGTTCTGCTTGATAACCAGATGGATGAAACTGCGCTGTTTAGTTACTGGCTCGGGGTATATGCGCCTTATTGTCTGCTTTGTGCGTGTCATCTTTGCAAATACAGGGCAACTTATGTAGGAAAACGATTAGCCTGGAAAATTTGATTAATCGAAACTATTTATTCATTGTAAAAAGTCGAGTTTATataaaaggaatgtataaatatGTATACATAGAAATATAATGTCAAGTCATCACAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13635	Protein patched homolog 1 OS=Homo sapiens OX=9606 GN=PTCH1 PE=1 SV=2
Q61115	Protein patched homolog 1 OS=Mus musculus OX=10090 GN=Ptch1 PE=1 SV=1
Q90693	Protein patched homolog 1 OS=Gallus gallus OX=9031 GN=PTCH1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002045 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02460 all species →	Patched	Patched family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000731 all species →	Domain	Sterol-sensing domain	Interproscan
IPR004766 all species →	Family	Transmembrane receptor, patched	Interproscan
IPR003392 all species →	Family	Protein patched/dispatched	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46022 all species →	PROTEIN PATCHED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008158 all species →	Molecular Function	hedgehog receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005119 all species →	Molecular Function	smoothened binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0045879 all species →	Biological Process	negative regulation of smoothened signaling pathway	Interproscan
GO:0097108 all species →	Molecular Function	hedgehog family protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06225	PTCH1; patched 1	-	Basal cell carcinoma	ko05217	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032221182.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

20.2Max TPM

10.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	12.76	14.63
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	9.17	13.02
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	15.52	20.24
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	14.03	17.07
whole 6 week old aboral regenerate · regenerate uncut	3	3	10.42	12.35
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	8.15	14.27
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	7.41	12.45
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	11.26	12.73
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	7.60	12.82
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	11.74	12.74
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	12.71	14.57
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	14.60	18.81
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	11.38	12.19
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	7.50	14.21
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	14.60	16.18
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	5.03	15.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	14.63
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.06
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.60
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	13.02
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.66
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.83
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	20.24
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	13.58
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	12.72
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	17.07
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.30
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.74
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.35
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.54
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.38
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	14.27
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	10.17
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	12.45
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.77
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.73
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.47
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.58
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.82
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.98
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.74
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.05
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.43
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	14.57
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	12.80
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	10.75
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	18.81
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.47
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	11.51
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.19
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.17
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.78
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.21
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.28
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	16.18
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	14.39
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.22
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	15.10
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.