Gene detail

Detailed information of XP_032221955.2 in Nematostella vectensis

Genomic Location: NC_064039.1:13114732...13126681
NR annotation: XP_032221955.2, pre-mRNA-splicing factor SLU7 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032366064.2

AAGGATCACGGGAAATCTCATcgaatccaaaatggcggacgaaaGAGCGACTAGTACCAcagaaacacagaaaaaaactcGTTTGGACTGGCGTAAGGAAAAAGAACTCGAGGAAGCACGAAAAGCTGGTACCGCCCCAGCGTTACAGGATGAAGAAGGAAGGGACATCAACCCTCACATTCCACAGTATATATCAGCTGCTCCTTGGTACTATGGCAAGACAGGACCAACTCTTAAGCATCAAAGACCTCAGccagagaaaaagaaagaagttgCAGCTCTTAATGAATGGTACAAGAGGGGGATACCTAATATCAAAGCACCATTGAAGTTCAGAAAAGGAGCCTGTGAGAATTGTGGAGCAATGACCCATAAAAAGAGGGATTGCTTAGAGAGGCCACGAAGGGTTGGTGCCAGGTTTACTGGTGATGACATTAGGCCAGACGAGTATATCCAGAAAGATCTAAGTCTTGATTATGACAGCAAAAGAGATAGATGGAATGGTTACGATGTGAATGAACATAAGAGAATTATTCAGGAGTATGAGAAGATAGAATTGGCAAAACAACATTTAAAAGCAGAGAAGCTAGAGAAGGATTTAGCAGAAGGAAAAAAGCCAGAAGAAATCAAAGAGGTCTTATCAGATGACGAAGATGAAGACAAGTATGCAGATGATGCCGACATGCCTGGACAGAAGTTTGACACAAAAAGACGAACTACTGTCAGGAATCTTAGGATTCGTGAGGACACAGCAAAGTACCTCTACAACCTCGATATAAACTCAGCATACTACGATCCTAAGACTCGATCTATGAGAGAGAACCCCCTGACAGACAAGGACCGCTCATCTCTAGTCACATATTCTGGGGACAATTTTGTTCGTTACTCTGGGGACACGTCAAAGATGGCACAGACACAAATGTTTGCCTGGCAGGCTTATGAGAAGGGAGCAGATGTCCATCTGCAGGCAGATCCAACTAAGTTAGAGCTCCTTAACCAGGAGTATAAAGTCAAGAAGGAGTATTTTGAGAAGGACAAGAAACAGTCCATTTTGGAAAAGTACGGAGGAGAGGAACATCTTGACGCTCCTTCAAAGGAATTGCTTCTCGCCCAAACGGAAAATTATGTGGAATACTCTCGCACAGGCAAAATTGTCAAAGGACAAGACAAAGCAGTTGCAAAGTCAAAATATGAAGAGGATGTCTACATCAATAACCACACAAGTGTATGGGGGTCCTACTGGGAAAATGGCAGTTGGGGATATGATTGCTGTTACTCTATTGTCAAGAACTCCTTTTGTACTGGGGAGGCAGGGAAAGCTTCTTATGACAAGGGGGTTGGTATGCCAATGACGACAGCAGCACAGACAATACAAGAAGCAGAGGACAGTGGAAAATCACTACTGGagATGCATCAGGAAAACAGAaagaaaggaaagaaaagggaTCATAAAgcagatgatgatgaggatgatgaagaAACAAAACGAATCAAACTAAAAAAGGCATTACGAGCAGAAGAAAAGCAACAAAGACAGGCCGAGCAGCTGCTGGCCATGGATGAGCGCAGTCGTCCATACAATTCTTTACGTGGAGACACCAAAGAAGTGACGGAAGAGGAGATGGAGGCATACAGAATGAGACGTCGACAGGGGGATGATCCAATGAAGGACTTTCTTTAGTTAAGTGGGATGTAGAAACTCCAACGAAGGACAAGTAAAAGGAAATGAAGGCATACAGAATGAGACAACCACAGGAGGATAAAACACCCTACAATGCGATAGTACAAGGAGCCAAAATAGGGGTACAGTTGGTGGGAGTCATCCATTTTCTCTTAGTTCTCTTGTCCTAATTCCCCCTACTTCCACCCCTGGGTTATGTTCCTGTAATACCAGGctatagcagggggtggggcccTGGGCCCTATTTTAGACAATTTTAAGAAagtgaccagtaggggcatggTTGTGCACCCCGaagttttcttattgtttccCCCTAGTTCACCCCCCTTGTGCCCCCCTTCAAATATGTTGAGGCCTGCTACAGGTCTGGGTACTAGAACTATGCAAACCAACCAAAGGAAAAGGACTAACATAGCCTATTATGTAGCTGCTCTGTGTTAGTAGATCTTTAGATACACAGCTCACTGATAGGTGACATGTATGTCTTATTTGAGACACCATCAGACCAAGTAATGAAGAAAGGAGTTATGCTTTTCTAAAGATTTCCAAAGAATGTGTTATAACGCAATAGGGCTTTATACATTTATGCACGAGAAAGACTTTGTTAACCTTCTTGCAAAATATGAGTTTTGTAAATAGAActaaataaagaacaaaaaagga

Protein

Uniprot

Uniprot term	Description
Q8BHJ9	Pre-mRNA-splicing factor SLU7 OS=Mus musculus OX=10090 GN=Slu7 PE=1 SV=1
Q5U3F2	Pre-mRNA-splicing factor SLU7 OS=Danio rerio OX=7955 GN=slu7 PE=2 SV=1
Q80ZG5	Pre-mRNA-splicing factor SLU7 OS=Rattus norvegicus OX=10116 GN=Slu7 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11708	Slu7	Pre-mRNA splicing Prp18-interacting factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039974	Family	Pre-mRNA-splicing factor SLU7	Interproscan
IPR021715	Domain	Pre-mRNA-splicing factor SLU7 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12942	STEP II SPLICING FACTOR SLU7	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0008380	Biological Process	RNA splicing	Interproscan
GO:0030628	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12819	SLU7; pre-mRNA-processing factor SLU7	-	Spliceosome	ko03041	deepkoala