Genomic Location: NC_064035.1:9610556...9618406
NR annotation: XP_032222158.1, zinc finger protein 830 isoform X4 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5521225 |
| Transcript |
| rna-XM_032366267.2 |
| Protein |
| XP_032222158.1 |
| UniProt accession | Description |
|---|---|
| Q63ZM9 | Zinc finger protein 830 OS=Xenopus laevis OX=8355 GN=znf830 PE=2 SV=1 |
| Q6DJ13 | Zinc finger protein 830 OS=Xenopus tropicalis OX=8364 GN=znf830 PE=2 SV=1 |
| Q6P0I6 | Zinc finger protein 830 OS=Danio rerio OX=7955 GN=znf830 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007139 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12171 all species → | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003604 all species → | Domain | Matrin/U1-C-like, C2H2-type zinc finger | Interproscan |
| IPR040050 all species → | Family | Zinc finger protein 830-like | Interproscan |
| IPR036236 all species → | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR022755 all species → | Domain | Zinc finger, double-stranded RNA binding | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13278 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005681 all species → | Cellular Component | spliceosomal complex | Interproscan |
| GO:0033260 all species → | Biological Process | nuclear DNA replication | Interproscan |
| GO:0033314 all species → | Biological Process | mitotic DNA replication checkpoint signaling | Interproscan |
| GO:0044773 all species → | Biological Process | mitotic DNA damage checkpoint signaling | Interproscan |
| GO:0048478 all species → | Biological Process | obsolete replication fork protection | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13104 | ZNF830, CCDC16; zinc finger protein 830 | - | Spliceosome | ko03041 | deepkoala |
Transcript abundance of XP_032222158.1 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
