Gene detail

Detailed information of XP_032222358.2 in Nematostella vectensis

Genomic Location: NC_064035.1:10412050...10424424
NR annotation: XP_032222358.2, WD repeat-containing protein 37 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032366467.2

ACCTTACACCAAGTATAAACCTTGCAGAGCCCGTTGTTTTTCTCCAAACAACACCAGAATGTCCCAAAAGCTCAGCCATTTTCTCTATTTTAAGCGATATTCACAAGCTTGAGGCTAAATAATGAGTAAGCAGCAAGCTTCAGGAGGCCAGAAAGTCAAGCCAAAGCGGCTATCTATACGTAGAACGCGAACTAGGTCACCGGACGGCCGCCATGATGGGTTAGCCGAAGAGGCGAGCTCTCTTCCCCCTGAAGCTAGAACAAGGTTATGGAACCTGTTTGCACAAATAGAAAGAGAATTCGAGGGAGTACACGCAGAAAATTGCGCTTtgaGAGAAAGGGTGGAAAAACTAGAAATCATCCTGAGTGGGGAGAAGGGAGTTGAAGGTGACATGGTGGTTGATGGAATGCCTGTGAAACCTGGCTATGGAAAAAAGCCATCTGCAAGTCAGCTCATGTCACAAAAGTTAAAAACCACATACAAGGCCTCTACTAGTAAGattGTGTCCAGTTTTAAGATACCCAACCAGGCTGCTGGCAGTGTTGAGTGTCACCGGCTGCGAGGATACCTTGGTCATAGGGATGGTGTGTGGGAAGTGTCATATGCAAGACACGGCCAGGCAATAATTGCTACGGCCTCTGCAGATCGCTCTGCACGCTTGTGGGATGTGGACTCAGGACTGTGTCTGTTAAAATACCTGGGCCACATTGGATCAGTCAACTCAATAAGGTTCCACCCGACAGAGCCCCTAGTGTGTACAGCATCTGGTGAAGGGACTTGTCATGTTTGGAGGGCTAATGTTTCCATCCCAGAACCACGCTCTCTGCCAGGATCAGCAGATGAAGCAGATGCAGCAGTGAGTGACCACGAGGATGTGGAAGGAGCTGACAACCCAGATGCCCCAACGCCTGCTATTCTTCGATCAGCAACACTAGAACTCAAAGGCCACGAAGGTTCTCTTAGTGCAGCAGACTGGTTCACATCTGGTAAACAGATTGTGACGGCGTCCTGGGACCGCACTGCGAAACTGTGGGATGTTGAGACAGGAGAACAAGTCCACTCACTCACTGGTCACGACCAGGAGCTTACCCACACCTGTACTCACCCCAGTCAACAGTTGATTGTCACTTCCTCCACCGACACCACCTTCCGTCTTTGGGACTTTAGAACGCCCTCCATACACTCTGTCAATGTATTTCAAGGTCATTCAGACACGGTTAGGTCTACTGCATTCAGCACTACCAAAGATATTGTTGTGAGTGGAAGTGATGACCGCACCGTTAAGGTATGGGATCTGAAAAATATGCGATCCCCACTGACCACCATCAACACGGACTCAGCTGTAAACAGATTGTCAGTTTCTTCTGTGTCCAATATCATAGCCATTCCCCACGACAATAGGCACATTCGGCTCTTTGATTTGAATGGTGTGCGGCTTGCACGTCTTCCTCGCCGCAATGGACAGGGTCATCAGCGGATGGTTTGCTGTACCGCATGGGGCGATGAGAACTCAACGAAATCCTGTAATCTGTTCTCGTGTGGCTTCGATCGCAGGGTCTTGGGGTGGCAAGTGATTCTTCCCAAAGAAGAAAAGTGATATCCAAAAGAGCACCGATAACAGTGTTGCCCTCACTCTTACATTCTCTTGATGGCGACACCATGACACCTGATGGCAACATAACAGCAAGTGCGCGTACCCATTTCCGAGAATGGgaaatttcgatttttttaaatgcaagcttgcaataacaacaaatgaagtttgttttctCTCGTGTGAtgttgtctttgtgttgtatGCCGCTAGTGTCTGCACGAAGAGATGAATTTATTGGGAGCAAAGGGGCTAGTCCCAGGCGCAGTCGTCCGTCGTGTTAGTCTAAAAAAACTCTGACAGTAAGGACGGCTGTCCCGGAGACTTAAAGAGGGCACGTTATAATGTTTAAAATGATTATTGTATGAGaatggtaataaaaaaaaactcaaacaaA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DDF0	WD repeat-containing protein 37 OS=Xenopus laevis OX=8355 GN=wdr37 PE=2 SV=1
Q8CBE3	WD repeat-containing protein 37 OS=Mus musculus OX=10090 GN=Wdr37 PE=1 SV=1
Q5R650	WD repeat-containing protein 37 OS=Pongo abelii OX=9601 GN=WDR37 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005217 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19855 all species →	WD40 REPEAT PROTEIN 12, 37	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24744	WDR37; WD repeat-containing protein 37	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032222358.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

45TPM > 0

16Conditions

41.4Max TPM

27.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	26.74	30.70
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	27.63	33.85
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	28.72	29.18
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	22.51	23.24
whole 6 week old aboral regenerate · regenerate uncut	3	3	29.07	31.12
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	13.14	20.63
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	31.16	35.74
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	29.79	30.99
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	31.33	33.29
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	28.54	30.96
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	30.17	31.42
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	32.88	38.19
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	26.90	29.63
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	33.06	41.36
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	33.90	34.68
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	10.05	30.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	30.70
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	28.17
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	21.36
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	33.85
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	25.48
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	23.56
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	29.18
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	28.73
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	28.24
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	23.24
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	22.70
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	21.60
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	31.12
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	28.18
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	27.90
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	20.63
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	18.80
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	35.74
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	30.34
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	27.39
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	30.99
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	30.88
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	27.52
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	33.29
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	32.88
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	27.84
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	30.96
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	29.02
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	25.65
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	31.42
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	31.09
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	28.00
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	38.19
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	32.30
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	28.16
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	29.63
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	29.61
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	21.44
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	41.36
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	31.30
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	26.51
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	34.68
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	33.71
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	33.30
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	30.16
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.