Gene detail

Detailed information of XP_032222384.2 in Nematostella vectensis

Genomic Location: NC_064035.1:10928318...10935214
NR annotation: XP_032222384.2, spermatogenesis-associated serine-rich protein 2 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5521261

ATGTCGGCAAAATCCAACTCTTCAAAACTACATAGCAGAATCCTTGACTGTGAGAATGGACATGTTTTTGCAGATATTTCCAGACAGCAGAACGGGGAAAATGTGAAGTCTAAAGTTGATTTCGTGTATGGCGCAGTCTCTTCTAGAAGCAAGAACGACATTCTTTTGGTCTTGCAATCCGTGGACTACAACGTAGAGGCTGCGATTTCTATATTTTCTCGAGGCGAAGATGAAGAAGTGCTTCAAACATGGAGTTTTCAAGGGAAGAAAAACAAGAATGGTAGTAGCAAGAAAAAGCGAAATAAGAAGAAACTAAATAACAAGGAAGCGTCTAAGGAAGAGACCACAAAGGAAGGCCAAGCAAATGATTTTGATGACTCAAGTTTGTCAAATGGAGCAACCTCTTCACAAGCTCAAGATGAAACAGAAAGTACAGAAAACCTATTACTGGACCTTAAATCTACCGAGGCTGTTGCCTCACTTGCTCCACCATCCCCATCAAGCTCTGAGACTTCTGGGCTGTCTGACCTGATAGCCTCACATAATGAGTTCCAGTCGTCACCAGAGCACACAGCAAAACTACATCCATCATCTGCACAGCATAAGAATGCCAAGAAATATGTGTCCAAACCTGAGCAGCCTGTAACACCCAACAACTCACACCACCACGAAACACTGAAAAAAACTATCAAAGACTTGTCACGTTCTACTTTTTCTTTGGCAAGATACAATGTTATATTGGAAGAGGAATGTGAAAGTTCATTGAAGCGAATTTCATCAACATTCAATACACTCAGAAAATGTCTTTGTGAGAGGGAGGCGGCCCTTGTCAAGGAATTAGAAGAATTCAAAGTGCAATCAGTGCATCTGTTGGAGGAAAGGCTTGAGGATGCCTCAGCACTAAAGCTAAAGGCTGAAAGAGCAGGAACTATGGGTGATGAGCAAGTTGTCCTTCTCAGAGCTGACATCAAGAGTTTTGTTGGACAGAGGAAGTTGGATGAAGAGTTGGCTCAAACAACTAGATTTGTCTGTGATGAGGAAGAAATGTTAAAGCTAATCAACACTTATGGACAAGTGGTCCCAATAAAGCACAACTACACACCTACTGTTCTTAACCATGTAAACACCCTGCCACAACCTCATAACAAAATATCAAACACACCCAAGCCACCCATTGAATTACCAACTCCTGCATCCATCACTTCATCTCAAACTGCCCACAACACAACAACCCTGATAGACACCACAACATCACCTACATCAACTACAAGTACAGCCTCTACAACTACAGCTAATGCAATCAGGGTTGAGGAGCCACCAAAGTCGTCATTCCTTCAAGAAACTGCAGAAATGCATGTTCGACTAAAACAAGCTCTTAAAAAGCAGGGAGTAGAGAAACCAAGTGACTCCAAAGGTTCTAGAGCCTCATCATCTAGCAAGCCTTGGAATAAACCACATGAATCAGATCACTCTCAGAACAAGAGCCACCATATTAAACCTGCCTTGCCCATGGATAACAAGGCACCGTATGTCCATCCAAATACAAAACAACAGTTTCAAGGAAAGCCGGGTGGAGAAGCTGCAAGGGAGAATAAAGATCTCGAAAAACCCAAAAGGCGGCAACGGAATAGAAGGGCCCGTAGTGCAGAAGTCTCAGCAGGCACGAAAGAGGCCAAACCTTCTGATGAAGGGAGTCAAGACAACAAAGTCGATTTTAGAAATATACTCGAGGGAGACACCAAGCGGAATCAGGAGTCACAGAAAAAGCACAGAGGTGGTACCCATTCGAGTGAGGCCCACAATAAGCCAAAGGGGGGTACCCAGCATAATATTGAGTCTCAAAATAATCCCAAGGGGGGGAGTCACTGTAGTGAATCCAACAGTAAGACCAAGAGGGGTCCCAAGCGAATTGAGGAATCACAGAGTAAGCCCAAGCGGGATACCGAAGGAAAAGAGCAATCACAGAGCAGGCCCAAGGGGGATAAAGAGGGGAAGGATAAATCTCAGCAAAAGCCCAAGGGGGATACAGAGGGGAAGGAGGAATTACTTGATAAACAAAAACAGAAAGAAGAGAAGCAGAATAAACCGGGTCCCCGGAGTCCCCGTAGAAGACCTGATTCACAGCAGAAAGATCTGAACAACTCACAGAGAAAACATAACTCGAACTCCCAAGCACAAAAAGGCTCCGCTGCTCGTCCCTTGGTCGAGGAGACGCCTCAAGTAGAGGAAAAACCCGATAATGCGAAAGACGGGAAAGTAGAGGATCCGCTTCCTCAGCGCCAACAGAACCGGCGACGCAACCAGAACAAAAGCGGCCGGGGCTCAAAACCACCACGGGACAACCCGCAACATGACCCGCAGTACAAGGGTATGAACGGGACGAGCAACGGGGTTGATCACGTGACCGATCTCAACGGTTTAGACGACACCGACGCCGTCAAGATCGCTAGCACCAAATCGAGCGACGCCAAGACAGTAGCGCCGGAGATTATAGTGAACGGGCACCACACGACCACCTTTGACGAGAAGGAGGTCAGAACTGACAAACCACTTGTCAATGGCTTTGCTACTGAGCATGCACACGAAGATAGTATAATAGAGAGATGA

Transcript

rna-XM_032366493.2

GAGAGTATATATTTTGATCAATTAGTGAGAGATATAGACTTTCAAGTTCTCCAGTTTTCTCTGCCGCTGTAACCAGTAACAGGGTACGACGGAGTTTATTATGTCGGCAAAATCCAACTCTTCAAAACTACATAGCAGAATCCTTGACTGTGAGAATGGACATGTTTTTGCAGATATTTCCAGACAGCAGAACGGGGAAAATGTGAAGTCTAAAGTTGATTTCGTGTATGGCGCAGTCTCTTCTAGAAGCAAGAACGACATTCTTTTGGTCTTGCAATCCGTGGACTACAACGTAGAGGCTGCGATTTCTATATTTTCTCGAGGCGAAGATGAAGAAGTGCTTCAAACATGGAGTTTTCAAGGGAAGAAAAACAAGAATGGTAGTAGCAAGAAAAAGCGAAATAAGAAGAAACTAAATAACAAGGAAGCGTCTAAGGAAGAGACCACAAAGGAAGGCCAAGCAAATGATTTTGATGACTCAAGTTTGTCAAATGGAGCAACCTCTTCACAAGCTCAAGATGAAACAGAAAGTACAGAAAACCTATTACTGGACCTTAAATCTACCGAGGCTGTTGCCTCACTTGCTCCACCATCCCCATCAAGCTCTGAGACTTCTGGGCTGTCTGACCTGATAGCCTCACATAATGAGTTCCAGTCGTCACCAGAGCACACAGCAAAACTACATCCATCATCTGCACAGCATAAGAATGCCAAGAAATATGTGTCCAAACCTGAGCAGCCTGTAACACCCAACAACTCACACCACCACGAAACACTgaaaaaaactatcaaagaCTTGTCACGTTCTACTTTTTCTTTGGCAAGATACAATGTTATATTGGAAGAGGAATGTGAAAGTTCATTGAAGCGAATTTCATCAACATTCAATACACTCAGAAAATGTCTTTGTGAGAGGGAGGCGGCCCTTGTCAAGGAATTAGAAGAATTCAAAGTGCAATCAGTGCATCTGTTGGAGGAAAGGCTTGAGGATGCCTCAGCACTAAAGCTAAAGGCTGAAAGAGCAGGAACTATGGGTGATGAGCAAGTTGTCCTTCTCAGAGCTGACATCAAGAGTTTTGTTGGACAGAGGAAGTTGGATGAAGAGTTGGCTCAAACAACTAGATTTGTCTGTGATGAGGAAGAAATGTTAAAGctaaTCAACACTTATGGACAAGtgGTCCCAATAAAGCACAACTACACACCTACTGTTCTTAACCATGTAAACACCCTGCCACAACCTcataacaaaatatcaaacacaCCCAAGCCACCCATTGAATTACCAACTCCTGCATCCATCACTTCATCTCAAACTGCCCACAACACAACAACCCTGATAGACACCACAACATCACCTACATCAACTACAAGTACAGCCTCTACAACTACAGCTAATGCAATCAGGGTTGAGGAGCCACCAAAGTCGTCATTCCTTCAAGAAACTGCAGAAATGCATGTTCGACTAAAACAAGCTCTTAAAAAGCAGGGAGTAGAGAAACCAAGTGACTCCAAAGgtTCTAGAGCCTCATCATCTAGCAAGCCTTGGAATAAACCACATGAATCAGATCACTCTCAGAACAAGAGCCACCATATTAAACCTGCCTTGCCCATGGATAACAAGGCACCGTATGTCCATCCaaatacaaaacaacagtTTCAAGGAAAGCCGGGTGGAGAAGCTGCAAGGGAGAATAAAGATCTCGAAAAACCCAAAAGGCGGCAACGGAATAGAAGGGCCCGTAGTGCAGAAGTCTCAGCAGGCACGAAAGAGGCCAAACCTTCTGATGAAGGGAGTCAAGACAACAAAGTCGATTTTAGAAATATACTCGAGGGAGACACCAAGCGGAATCAGGAGTCACAGAAAAAGCACAGAGGTGGTACCCATTCGAGTGAGGCCCACAATAAGCCAAAGGGGGGTACCCAGCATAATATTGAGTCTCAAAATAATCCCAAGGGGGGGAGTCACTGTAGTGAATCCAACAGTAAGACCAAGAGGGGTCCCAAGCGAATTGAGGAATCACAGAGTAAGCCCAAGCGGGATACCGAAGGAAAAGAGCAATCACAGAGCAGGCCCAAGGGGGATAAAGAGGGGAAGGATAAATCTCAGCAAAAGCCCAAGGGGGATACagaggggaaggaggaattacttgataaacaaaaacagaaagaaGAGAAGCAGAATAAACCGGGTCCCCGGAGTCCCCGTAGAAGACCTGATTCACAGCAGAAAGATCTGAACAACTCACAGAGAAAACATAACTCGAACTCCCAAGCACAAAAAGGCTCCGCTGCTCGTCCCTTGGTCGAGGAGACGCCTCAAGTAGAGGAAAAACCCGATAATGCGAAAGACGGGAAAGTAGAGGATCCGCTTCCTCAGCGCCAACAGAACCGGCGACGCAACCAGAACAAAAGCGGCCGGGGCTCAAAACCACCACGGGACAACCCGCAACATGACCCGCAGTACAAGGGTATGAACGGGACGAGCAACGGGGTTGATCACGTGACCGATCTCAACGGTTTAGACGACACCGACGCCGTCAAGATCGCTAGCACCAAATCGAGCGACGCCAAGACAGTAGCGCCGGAGATTATAGTGAACGGGCACCACACGACCACCTTTGACGAGAAGGAGGTCAGAACTGACAAACCACTTGTCAATGGCTTTGCTACTGAGCATGCACACGAAGATAGTATAATAGAGAGATGATATCCGCTCCTTTGTATAGCTAAATTTATCAAAAGcgaattttgacaaaaaatatatatatattcattCTTAACGCGCTCTTTATCAGGGTCAGTCAATATTATGGAATCAGATatcaaattttattaaaatgttTTATGTTCGCCGCTTCTAACAGATTACTTATGGTAAAATTGCACATTTTGATATAACTGGAAATCGGTTTATGGAATGTGGTTTTCACTCATTGGCatgaaaaaaattgcaaaacatcaacacaacatacTGCTTTCAAATAAAACACCACAATGACGTTTa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008125 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07139 all species →	SPATS2-like	Spermatogenesis-associated serine-rich protein 2-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009816 all species →	Family	SPATS2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15623 all species →	SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032222384.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032222384.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

45TPM > 0

16Conditions

27.0Max TPM

16.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	16.00	16.16
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	12.65	17.84
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	19.99	22.61
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	20.05	21.67
whole 6 week old aboral regenerate · regenerate uncut	3	3	17.59	19.95
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	17.08	17.67
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	18.53	21.71
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	18.19	20.97
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	17.67	21.79
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	22.46	25.82
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	19.56	21.30
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	10.98	17.63
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	13.62	15.93
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	12.78	19.90
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	17.08	19.47
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	16.11	26.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	16.16
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	16.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	15.86
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	17.84
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	11.25
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.84
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	22.61
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	19.43
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	17.92
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	21.67
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	19.53
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	18.96
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	19.95
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	17.95
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	14.86
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	17.67
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	17.26
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.31
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	21.71
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	17.64
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	16.23
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	20.97
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	19.48
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	14.12
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	21.79
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	15.70
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	15.53
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	25.82
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	21.96
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	19.60
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	21.30
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	20.17
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	17.21
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	17.63
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	15.29
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	15.93
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	15.77
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.15
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	19.90
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	18.46
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	19.47
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	17.19
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	14.58
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	26.96
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	21.37
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.