Gene detail

Detailed information of XP_032222729.2 in Nematostella vectensis

Genomic Location: NC_064035.1:13026977...13032871
NR annotation: XP_032222729.2, sodium-dependent phosphate transport protein 2B [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032366838.2

TAGCGTGACGTCATAGCGTGGTGGCTCAAATTTACGATCAGATACCGGCAGATTTCAGTTCACCAAAAATGGCGGACGGTAAACTAGCTTTTTCAAACATTCAGAGCGAAGAATTGCTTGGTGTTCGTAAGAATGAGTCTTCgAAGAAGAGCCTGGACGTAGAAGTCGCGATTGAAGCGGGAAGTCGTTTGGTTCTAACTGACGAGAATGAGGAATTTGATCCTTGGGCCTTGCCTGCGTTCAAGAGTGTTGGACCCAAGTGGTCGGAGCTTGAAACTTCTGGAAAACTAAAGCGAGTGCTGCTTTTGATCATCAAGTTTGCCATGCTTACTGGTTTGCTGTATCTGTTCATCTGCTCGCTGAGTTTCCTGAGTAGTGCGTTTCGTTTACTTGGCGGAAAAGCGGCCGGAGAGGCGTTTGCTTCGAACAAGATTCTGACCAACCCTGTTGCCGGACTGATGATTGGAATACTCGCGACTGTTCTTGTTCAGAGTTCATCCACCACAACATCCATTGTAGTAGCCATGGTCGCCTCTTCCATAATAGACGTGAGACCTGCCATCCCTATTATCATGGGTGCCAACATTGGAACCTCTGTGACCAACACAATTGTGTCCCTTGCCCAAGCTACTGAGCGCAATGAGTTCCGAAGAGCCTTTGCTGGTGCTACAGTGCATGATATCTTTAATTGGCTCTCCGTGCTGGTCTTTCTACCTCTGGAAGTTGTTTCTCACTACCTGTTCCACTTCACAAGTGTCCTTGTCAAGGTCATGGATCTTAAAACCAATAAGGGGTACAAAACAGAATTCCTGTCCAAACTGACTAAGCCATTTACACAGCTTGTCATCCAGCTTGATAAGAAAGTCATCACCCAAATTGCACTTCAAAAGAAAGGCGCTGAAGACAAGTCTTTGATTAAGTCTTATTGCAGTAAAGAAAGTGTAGTTGTCTTGGAAAATGTCACAAGCCTTATCAATGAGACTGTTAATGGCATCACTGTTGCAGTCAACAGAACAGCACCAATGAACATTACGAAAGAACTCAAGAACCCATGCAAGTTCCTGTTCTATGACACTGGGCTGTCTGATACCTCCGTTGGAATCATTTTACTGGTAATTGCCCTCCTCATTCTCTGTACCTGCCTTGTTCTGATTGTCAAGCTCCTCCACTCTCTGCTAAGGGGCCAGATTGCTGCAGTCATCAAGCGCACAGTCAACTCGGACTTCCCCAAGCCATTTCACCACTTCACTGGGTACTTTGCCTTGCTAGTGGGTGCCACCATGACTATCTTGGTTCAGTCAAGTTCCATCTTCACGTCTGCTCTCACCCCCCTGATTGGTGTTGGTGTTGTCACCATTGAGCGTGCCTATCCCCTTACCCTGGGTGCTAACATTGGTACCACTGGTACTGGAATCTTGGCTGCCCTTGCAAGTGACCAAGGACAACTTGATAAAGCCCTCCAGATCGCCTTGTGCCACTTGTTTTTCAACATTTCTGGTATTCTTCTGTGGTTCCCTATTCCCTGCATGCGCAGAGTCCCCATCAACTTTGCCAAGACCCTGGGCAACAAGACTGCTGATTACCGTTGGTTCGCTGTGGCCTACCTCATATTTGGATTCTTCCTTCTCCCTGCATCAGTGTTTGGCCTCTCCCTTGCCGGTTGGCAGATCCTCCTTGGTGTTGCAGCTCCCCTTCTCCTACTGTTCTTGTTCATACTTGTTACAAGTCTGCTGCAGCGCAGGGCCCCTAATGCTTTACCAGAAGTTCTGAAAGACTGGGAATGGGCACCCAAGTGGACACGCTCTTTGGAGCCTCATGACAAAGTCATCACCAAAGTGTGTGAAATAAGCAAAGGGCGATGTGGGATCAAAAGAACTAAAGATCTCCCTGATTTGGAGACCTGTGTATAGAAGAAGTGTGTTTTGGTAGTGCATGTAAACATGCCAAATCAATAAGATAAGCATAGCAATAGAttatattaatttattttgataCATGATTTCTTTACTATCTCTTTATTATGTGGAGCCTTTTTTTGTTCAGTTTGAACTTACATAATGTTTAAACATGCATACAGTACAGTTCatatttgaataattgttaaaacattgtttttgtggggttatttattaatttacaTGCTTTGCTTTCTTTATAGGATGGTTTACATGCATTTAGCAAACATGGCTATCTAAAAGATCTTTAGAAAGCAAAATATCAGCAATACATGCTAATGTTTGCTTCTAAAGTGGTCTTTTAGAAATTGTTTGCTTCTAATAATGTAAGTGTTcatagaaaaatataatatacatttatatgagaaaaaaaataaaacatacttTGAAGCCTTATCAGGCTTTGATTCACATTATTTAAGGTAAGTTTTATATTAATTTGGTAGCATAACGCATGGTGGCAttgcaataaaataaacatgatTTGTGTAATGATTTGAACATTGTTATTGGTGATATCATAATACTCACAATAGCCTAACAAGAAAAACCTGCCCCTGTATAATTGGCGTATCATAATGCTcaaagtatttgttttggttacTACATGGTTCTATGATTATGATAAGAAATGGTAGCCTAGCAAAAACAATGTTTCAACTACATGTGATATTTTTGGCTGGAATTCTTCACTAGAAATCTTTGAAATACCAGTCAGTTCCAAACTTTGTTATTGAGTGCAGAAGATAGAAAGTGcctgtgtgtgtgtttttttttttttaggaaattaATGTAAAACCATTTTTCAAAGCTGAATAGTTGTTGGCTGCTTAGATTGTTCATTAATTCTCATTCACTTATTCACCCATACCAATGGGTTAGGCCCTTTAAATAGAATACCCTTGCTGATAGTTTGCCACCACAATTATAAGGTAGTTTTATGGTAATTCAGAGAATATGTATAATTGATAGACTTATTTCTTTTCAGGTGGGGATCAAGAATTAAGACTAGGATTTTAAACAAATCATTCCAACAAGGTCTTTTTGGTGCATTGTCAAGTGTTATATGTACAGACTATTTTTTGTTGAATTGTATATTATGGTACTGCTCTAAATGTTATTTATGTTAATGACTAGAACCTGTTTACTTACAGAAGTCCATTTTCTTTTCAGGTTTGTGTAGACAGGCTACACCAGAGCTATTTACATACCAATTTGTCTACTAGAAAAATACATATTAATAAGGCTAGTGTTATTTTTCTGGGGATCATCCACACAAGATAATACAAATTTGCAAATAAGATTTTGCCtcaagacattttttttaaaaacacgaggttcccctttaaaagggaaagctcctcccgtCCCCGGGctcaaatttgcaattataaccAGAACACTGCCACAAATTACAAGTCtactgtaaaattgcttatctctgagTCTAAGTCGGCTggaataaaattatttttgcacaggtaacaagacagttttcttaagagattgataaattagttatttgctgtccactcacCTTTTCGGTGCAAAATTTTGCGCTATCCATTACCTAGCCcacctgcataaattattctcgcgctgtgaTGGAAATGCTtgtattttagagcgcacacagcttagtatagcattattttatgatagaaacatttttagatggacAACTATGAATGaaatttattttggttttgaATATGAAATTTGGATTCAGCGCTCGGAGCAATTGTcttgactcattgacggctgattgataactgattgttcttgagcctgggggtgggaggagctttcccttttatagcggaacctcgaaATGTTTGTGTATCGAATATTttcttcaatttgtttttcgaAGAAAATAATCCTAAAGACCAAAATTTCCCTGCAATTTTTCGCTGCAAAGTTGAAATTTATCGTTATTCCAGGGTGCTGACAAACTCATTCCCCTGAGTGTGGTTGGGGGCCAGACACAATAGAAAATGCAATGCCATGGCAACCGCTGTGACCATTGTATTGTgtctgggggggagggggggcgacTTTTGTCAGCACCCTGGAAGAACGATAAATTTCAACTTTGCAGTGAAATTCTGGTCTTTTTGATAATTTTCTTTGATTGATGTTTAGAAACTATTCTTCTATGGCATATAGAATTTTGAAGGGAGAAGCTTCCGTTTTCTGCCGAAAAAGTTGCCTTGAAGAGTCAAAGTTGTGATTGCTAGGGAGCTTCCTACCctgttgtattttattacgAGTGGGGAGGAGGTGAACCGAGATGAGGGAGGAAAATCGCCTAAAATGTTATGAATCGCGGCTAAAACAGAACCAGATCAATCTCTACGACAACAACTACAATAAATTGgctttataaaatatatacagtacacaaattaaagaaaatattcgATACACGAACATTTTGTCTGGTTTTCCCGTGGGCATACTGCAATACAGTGAAACCTCTACACGTTCTTACTATATTGATCAACAATTAGGCACAAGAATACACTTTAAGTGTATGTGGGTGACGACAAATTCAAGTTGCATTTTGTAATGACATTTGGAGGCACAAATTTTTCATCTAGTGATTTGCAACATTCAGAGCCATTTTGaattgtaaaaaatattttgatattgATCATAGAAAAAATTTGTCCATTATTTTTCTTACCTTTTATGGACGTGGTCTAACAAAGCTATGATTcgacacaaggttgaaaaagtatgttgaACACCTGTGAAACAGCAGTTGCGCTGACGATTTGAGTGTTAACTGTAAAACGGCCTAACTAGTATTGTTGGCTATTGAACTTCATGCCTATCAAATAGTACTTTTCTCCCATCTTTATttgcctatttttttaaaactatcATGGTGGCCATGGTTGTACATTGTGAACAAACATCCACCCTGTACAGCAAAATGTTCGTGAgacgagttttttttttctttttttgctgctgaaattgataattattattactgTAAGAGTAGACCATTTGATTGATCATTCATTTGTGTTGATGCTACTAATAACACCAAATGATTGTTTTATCACTGCGCAATTCATTAGTAGATGCAAGTGTATGAGTAACATCTTTAGAGACTACCCAgataaaaatccttttttctgCTCCGACAGAAGACTAACACTCGAAACATCAGCACAACTaatgtttcacagaggcgattcacatactttttcaaccttgtgttgaattATGCCTTGTCTATACCACACCTACGCAGACGATCTAGTCcttttacagcttgtctgtagtctttttaGTTATACCAATTGCCAAAAATTTTTAAAGCATCAAGTCTATTGAATCGAAACACCTCAGGTAAGTGTAATATGTTGTGTACTGTATGATTTGTGTATACTGTATGttttgagaaataaaaaaatgtctatCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95436	Sodium-dependent phosphate transport protein 2B OS=Homo sapiens OX=9606 GN=SLC34A2 PE=1 SV=3
Q5REV9	Sodium-dependent phosphate transport protein 2B OS=Pongo abelii OX=9601 GN=SLC34A2 PE=2 SV=1
Q27960	Sodium-dependent phosphate transport protein 2B OS=Bos taurus OX=9913 GN=SLC34A2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001416 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02690 all species →	Na_Pi_cotrans	Na+/Pi-cotransporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003841 all species →	Family	Sodium-dependent phosphate transport protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10010 all species →	SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005436 all species →	Molecular Function	sodium:phosphate symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0044341 all species →	Biological Process	sodium-dependent phosphate transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14683	SLC34A, NPT, nptA; solute carrier family 34 (sodium-dependent phosphate cotransporter)	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032222729.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

16Conditions

134.8Max TPM

59.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	51.67	60.48
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	29.19	39.39
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	45.32	59.45
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	102.47	134.76
whole 6 week old aboral regenerate · regenerate uncut	3	3	31.33	45.63
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	79.99	103.69
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	42.18	48.14
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	66.38	93.55
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	66.75	88.66
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	77.97	85.41
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	67.48	77.84
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	60.70	73.81
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	57.54	76.46
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	66.07	77.06
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	40.54	49.47
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	70.10	81.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	60.48
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	55.06
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	39.48
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	39.39
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	24.67
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	23.52
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	59.45
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	46.70
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	29.80
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	134.76
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	92.92
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	79.75
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	45.63
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	27.91
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	20.44
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	103.69
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	69.63
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	66.63
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	48.14
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	41.87
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	36.53
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	93.55
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	66.40
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	39.19
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	88.66
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	62.42
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	49.17
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	85.41
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	75.43
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	73.08
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	77.84
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	66.60
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	57.99
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	73.81
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	59.38
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	48.90
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	76.46
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	49.84
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	46.33
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	77.06
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	71.01
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	50.15
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	49.47
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	43.84
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	28.32
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	81.29
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	79.35
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	49.66

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.