Genomic Location: NC_064035.1:13861850...13882412
NR annotation: XP_032222767.2, integrin beta-1-A isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5521686 |
| Transcript |
| rna-XM_032366876.2 |
| Protein |
| XP_032222767.2 |
| UniProt accession | Description |
|---|---|
| P07228 | Integrin beta-1 OS=Gallus gallus OX=9031 GN=ITGB1 PE=1 SV=1 |
| P12606 | Integrin beta-1-A OS=Xenopus laevis OX=8355 GN=itgb1-a PE=2 SV=1 |
| P12607 | Integrin beta-1-B OS=Xenopus laevis OX=8355 GN=itgb1-b PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000809 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07974 all species → | EGF_2 | EGF-like domain | Domain | Interproscan |
| PF08725 all species → | Integrin_b_cyt | Integrin beta cytoplasmic domain | Domain | Interproscan |
| PF00362 all species → | Integrin_beta | Integrin beta chain VWA domain | Domain | Interproscan |
| PF07965 all species → | Integrin_B_tail | Integrin beta tail domain | Domain | Interproscan |
| PF17205 all species → | PSI_integrin | Integrin plexin domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014836 all species → | Domain | Integrin beta subunit, cytoplasmic domain | Interproscan |
| IPR015812 all species → | Family | Integrin beta subunit | Interproscan |
| IPR036349 all species → | Homologous_superfamily | Integrin beta tail domain superfamily | Interproscan |
| IPR013111 all species → | Domain | EGF-like domain, extracellular | Interproscan |
| IPR012896 all species → | Domain | Integrin beta subunit, tail | Interproscan |
| IPR002369 all species → | Domain | Integrin beta subunit, VWA domain | Interproscan |
| IPR032695 all species → | Homologous_superfamily | Integrin domain superfamily | Interproscan |
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR033760 all species → | Domain | Integrin beta N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10082 all species → | INTEGRIN BETA SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005178 all species → | Molecular Function | integrin binding | Interproscan |
| GO:0005925 all species → | Cellular Component | focal adhesion | Interproscan |
| GO:0007160 all species → | Biological Process | cell-matrix adhesion | Interproscan |
| GO:0007229 all species → | Biological Process | integrin-mediated signaling pathway | Interproscan |
| GO:0008305 all species → | Cellular Component | integrin complex | Interproscan |
| GO:0009986 all species → | Cellular Component | cell surface | Interproscan |
| GO:0016477 all species → | Biological Process | cell migration | Interproscan |
| GO:0033627 all species → | Biological Process | cell adhesion mediated by integrin | Interproscan |
XP_032222767.2.Transcript abundance of XP_032222767.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
