Genomic Location: NC_064035.1:14607647...14632164
NR annotation: XP_032222852.2, cytoplasmic dynein 2 intermediate chain 1 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5521720 |
| Transcript |
| rna-XM_032366961.2 |
| Protein |
| XP_032222852.2 |
| UniProt accession | Description |
|---|---|
| Q8C761 | Cytoplasmic dynein 2 intermediate chain 1 OS=Mus musculus OX=10090 GN=Dync2i1 PE=1 SV=1 |
| Q8WVS4 | Cytoplasmic dynein 2 intermediate chain 1 OS=Homo sapiens OX=9606 GN=DYNC2I1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003655 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
XP_032222852.2 in Nematostella vectensis.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR042505 all species → | Family | Cytoplasmic dynein 2 intermediate chain 1 | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16022 all species → | WD REPEAT DOMAIN 60 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005868 all species → | Cellular Component | cytoplasmic dynein complex | Interproscan |
| GO:0042073 all species → | Biological Process | intraciliary transport | Interproscan |
| GO:0045503 all species → | Molecular Function | dynein light chain binding | Interproscan |
| GO:0045504 all species → | Molecular Function | dynein heavy chain binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22869 | WDR60; WD repeat-containing protein 60 | - | Cilium and associated proteins | ko03037 | deepkoala |
Transcript abundance of XP_032222852.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 8.25 | 9.59 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 7.19 | 9.53 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 7.67 | 10.14 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 8.35 | 9.19 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 8.00 | 10.52 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 2 | 4.69 | 9.23 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 2 | 5.49 | 8.46 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 8.19 | 9.49 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 2 | 6.29 | 10.62 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 10.01 | 11.49 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 7.72 | 8.46 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 2 | 5.16 | 8.29 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 7.42 | 8.14 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 1 | 3.23 | 9.68 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 2 | 6.28 | 10.20 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 1 | 3.29 | 9.87 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
