Gene detail

Detailed information of XP_032222907.2 in Nematostella vectensis

Genomic Location: NC_064035.1:12922122...12929139
NR annotation: XP_032222907.2, sterol O-acyltransferase 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032367016.2

CCGTAAAGTTCTCATGTTGTCGCTGGGTTTGCTGTTTAAAAGTGTTTTCACGAGATTTCAGGACCTTTgagattttgattttctttaCTTTGACCTTTTGACAAGTGAGTGACGTAAAAGTACGAGGTGAAACAAGGCCAGGCCGCGTGGCGCAACTAAACTCCACTCATCGCCATGGCCGAAGCTGAGGGGTCGAGTTTACGCTATCGGGGACCAAATTCTAACAACGGAGCGCTAAAAACCCACCATTTCAACGCTAACCAGAATGCGCTTAGAGCTCAGGAACTTCGCCGACGAACAGAGAAACTTCGTGAAGAGGTTTTGGAGCAGATCGACGGTCAATTAAACGATTTATTCGATGGTGTGTTGCGAGATCTGGAGTCGTCTGACGAGGATCTAAATGCTGATCGATTTCTAGATAAAAGTAATGGAAATAAAGTGTTCAAAGCAAGAAATTCTATGCTAACGGATCTACTACAAGTCAGTCATGTCCAGACTATCTACAATATCTTTGTTGCATTGCTtgcagtttttgttttgaatactGTCATCTATGACTTCATCGACACTGGACGATTGAGCTTGGACTTTTCCATTATGTTTTGGGCTTTTGGCAAAGTGTCTACCGTCATCAACGTCTGGCTAGTTATGCTGATTATGTCACTTCTGATATTTCCCCTGTTTCGTTTTTGGCACAGTTCACAGTCCACTTGGTACCACTTGCCCAACATTGTGTGGCTTGTGGGCTACATTGGCTATATTGTTGTGTTCTGTGTGTTTCCTATCCAGGAGGTTTATACACATGACCTCCCCCCTGTCTCATCAATAATCATTTTAACAGAACAGattCGTCTTATTCTCAAAGTTCATGCATTTGTTCGGTCTAATGTGCCTAAAGTGTTATGTTCTGTAACAAGTCAGACATCAGGCAGTGTTGCAAGTCAGAGCTCAGACACCAGTGAAAATGAGAATGAGATACCTGAGTTTGGCCAATATTTGTACTTTTTGTTCTGTCCCACCCTGGTGTATCGAGACCATTACCCAATGACGCCTTGTATTCGCTGGGACTATGTTGTCTCCAACTTTTTCCAAGTGGCAATGTGCATCCTGTACACATATTATGTGTTTGCGAGATTCTGTGTGCCAGTCTTCAGAAACACAGGCAAAGAGGCAGGGAACTTCAAGAACCTAATTTTATCAGCGTTTAGCTGTATGCTTCCTGGTACTATGGTTCTTGTTCTTGGTTTCTTTGCCATTCTACACTCCTGGCTCAATGCCTTTGCCGAGATGACAAGATTTGCAGACAGAATGTTTTACAAGGATTGGTGGAACGCACCTTCTTATGCTGATTGGTACCGCACCTGGAATGTCGTTGTCCACGACTGGCTCTACACATACATCTACAAAGATCTAGTGCAGCTGACGAATAATCGTAATCTCTCCACTGTCGCTGTATTCGTCGTCTCTGCCATTGCACATGAGTACGTGCTGATGTTTGCCTTCCGGTTTTTCTTCCCGATCCTCTTCACCATGTTTGGGGGTGTTGGACTGTCCTTCGTCTTCCTGAAGCCGAGCAAGCACAACAAGCACTCTCAGTGGTGGAACATCTTCATGTGGATCACCCTCTTCCTTGGCAATGGCCTGCTCATGTGTCTTTACAGCCAGGAGTGGTACGCAACCCAAAACTGCCCCAGGAAAAACCAAGACTTGATCTCGATGCTTACTCCCCGGTCATGGAGCAGTGAGTGTATAGGAAAAAGCTGAATCTACACCTACCGTGTCAAGTGATCACTTAATATTTAATTCGATAAATAATTGATGATACGTTAAAGAGTTCATATAAAACCAATTCGCTAAAGAAACAGCCCAATATATTGAGTAGGTACATTTCTAAAGGACCTTCGCTTGTGCTAGTACTGTACGCAAgacgcattttttttttagcgtatataattttgtaaaaCGACACTCGACACATTAACCGTCATAGAAGGGGgataaataattttctaaataataaataatttgcCCGTTTAAACACTGATAACGTGAAAGTAATAATTTCCGGCGTTATCCTCGAGGCTATTCTCAATCCAGTGATGCTGTTTTTGTCTGAAGCCTAGCAGCTAAATCCTGCGCAAATAGCGTCAACCTTTTCTGGCGAGACGCTGGTCAAGCAATGTTGGCGCTTTAGCACCATGTTAGGAGGTGCTGAGAcgtttcctttgtcttgtgggcAGCGAGTGTAGTGATGCCAGGAATGTTggcgctgtttgcacgggTTTATTAACTTTAAAATTTCTAATCGTAAGAAGATATCTTACTGTTGTGTAAAGCTGCGAAAGATACACGACACAAATccatattttaaaattgttcgCTCCGTGGCAGTCCGGCGTGTTCGTCGTTCATCAATAGAGCAATGTTCTGTTAAAATTATAATCTCGACGTTAGAATTTGGTATGatgcaataaaaaaaggtCAATTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61263	Sterol O-acyltransferase 1 OS=Mus musculus OX=10090 GN=Soat1 PE=1 SV=2
O77760	Sterol O-acyltransferase 1 OS=Chlorocebus aethiops OX=9534 GN=SOAT1 PE=2 SV=1
P35610	Sterol O-acyltransferase 1 OS=Homo sapiens OX=9606 GN=SOAT1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006243 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03062 all species →	MBOAT	MBOAT, membrane-bound O-acyltransferase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014371 all species →	Family	Sterol O-acyltransferase, ACAT/DAG/ARE types	Interproscan
IPR004299 all species →	Family	Membrane bound O-acyl transferase, MBOAT	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10408 all species →	STEROL O-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008374 all species →	Molecular Function	O-acyltransferase activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0008203 all species →	Biological Process	cholesterol metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00637	SOAT; sterol O-acyltransferase	EC:2.3.1.26	Cholesterol metabolism	ko04979	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032222907.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

44TPM > 0

16Conditions

24.4Max TPM

17.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	19.13	22.41
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	15.57	18.45
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	16.73	17.84
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	20.88	22.77
whole 6 week old aboral regenerate · regenerate uncut	3	3	15.68	16.49
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	12.94	22.34
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	17.11	20.11
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	18.78	22.89
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	14.77	22.40
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	21.24	22.34
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	21.27	21.89
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	21.81	24.40
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	19.22	21.23
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	14.07	23.07
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	18.02	19.06
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	12.22	22.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	22.41
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	21.87
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.10
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	18.45
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.89
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	13.39
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	17.84
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	17.63
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	14.71
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	22.77
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	20.19
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	19.68
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.49
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.21
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	14.35
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	22.34
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.49
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	20.11
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	17.04
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	14.18
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	22.89
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	17.39
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	16.07
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	22.40
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	21.89
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	22.34
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	21.62
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	19.75
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	21.89
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	21.80
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	20.11
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	24.40
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	22.20
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	18.82
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	21.23
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	18.65
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	17.78
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	23.07
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	19.12
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	19.06
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	18.76
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	16.23
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	22.12
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	14.54
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.