Gene detail

Detailed information of XP_032223010.2 in Nematostella vectensis

Genomic Location: NC_064043.1:6214439...6219587
NR annotation: XP_032223010.2, uncharacterized protein LOC116604573 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032367119.2

tgCATGAATTTTTCATTATCTCGAAAGACCAAAAACCTACGCTGATTTTAAATATTAATGAAATAATAACGCTAACCTGCGAATCCCACACTAATACTAAAACCGCCAAAATACTGATACGAGCTATTGACGTACACCATAGGAACGAGAAAGTGTTTACTCGAGTGAAACCGATCAGGGCAGCTAAAGTATGAAAAGCTGATAACAGGGAATTCCTTGTGGTCTTACAGAACATAGAAATAACCCCACATTATCAGAGAGCTGTAACGCATGGTTTAGATATGTTTTTACTGGACAAATCGCGTATAACGATAAATGATTTACGCCAGGTGTCCCAAGCGTCACGAGAAGCCAGACTTGACCAGGAGCTCGCCCGCTTCGAGGACTGCCTGGAAATTACCTTAGTAGATAAGACGAGGTTCCTTGAAGATCTTTACCGAAGATTGCAGCAACTCACAAGTAGATGGCGGTCATGGCATCGAGGCTCATCGAGCACGGGAGGCCGAGGGACACAGTTCATTTCAATTGGACAGATTGAGGAACTGGTAGTATGGGATCGTACGATCCATACCAAGCACAGAACATCGACAGACACATCCGCAGGAGATGAAGACAAGCCAATCGACACGCTCATTCGATTTTTGCAAGCTTGCAAGGATTCTCAAGACCTGTATGACCAGTTTGACCATAATCTATACCGACCTCTCAACGAGTTTTTCAAAGATGAGCAAGTCAAACCACTGGCGCAGGCGCTCGTTGGCGTTATGGGGCGCTGGAAGGGACTCCTTTCTCCAGGTCCCATCAATCACCGAATGTTCAGCGCAAAAAGCGCAGATGCAGTCTACTACATGGACCTGACCTGCCGACCACGTGACTCCCAATTTAACCTCGTTCTCAGGCTCGTCCCAGACCTCTCACTCAAGGCTTTCGAGGCTTTTTGTCTTGCAAAGCAGTGGCGCTCTAGCGTGGGTCCAGCCGGATACACGCGCGAGTTGAACTATATTTATTCCAAATGGATACCAGAGAAACGTGGTGCAGATAGTGATTTTCATTGTAAAGCCATCGGAGGTAAGTCAGCGATTAAGAAAAGCTTTGAGCTGATGACCAATCAGGAGAGGCTTCGCGAAGTGCAGAGTAAACTGTGTGCGACTGAAAAAGTCATTGCGAACTCATCCGAGCATATGCATGATACGAGCTCAGAGGCGCATCGCCTGTCGGGCGCAATCGGAACCACTCTTGAACAGCTCGGATCCATGAGACAAAAAGTAAAGACTGCGCGTTTTGCGCGGGGAGAGATCGTCCGTGGAATGGGCCGAACCAAGGGCTACATCGATATGCTGCAAGAAGAGATGAAGAGAGAGCAACAAGAGATCCAAAGGATTCGTGCAAGGCTTATTCAATCAGAAATTAGCTGGAAGTACACTAACAACCGCGAAATGACTAGGGTGCTTGAAGACGACCTTGCCGAGTCCATAGCGAGATGCCAGCACCTCCGTACGGAGATCACCCGGGCGGAATCCGGATACGGCATTCAAAAAAATCGACATCGCTCGGCATGCGACCGACTGAACGACGAACGCGACGGGCTCGAGTCGATCAAATCTGAGCGCGTCGCGATTAGCCGAAAGCTACTCAAGTCCCGAGACAAGCAAAGGGTACACGAAAAGAGGTTGGTCACTGCCGCTGACAATTTTAACTCACTAAAAGAGGAGCTGAGACAGAGCAAGCTGACTCAGAATGTACTTATACGGCAGATGCTACAACCAAAGCAGGAGGAGCGTCCTTGGACTAAGACTTTGTAGATAGACTTTTACGGCAGATGCTACAACCAAAGCAGGAGGAGCGTCCTTGGACTAAGTCTTTGTAGATAGACTTTTACGGCAGATGCCACAGCCAAAGCAGGAGGAGCGTCCTTGGACTAAGACTTTGTAGATAGACTCAGATAAGTCACCTACTGTAAATGAATTAAGGGAACACCCCCCTTATCTAAAATTCGCTCCTCTTAGCTCACGAGTTTGTATTGAGCGCCATACTCTTACGCCTCCTCTATTAAACGAAAACAGGAGATTTCCCTCATAAAGTAACACTCAAACGCCCCCCGAGGAGGAGGTTAAACTGTCATAACAaattattattgtattgtaacgTGCAACGTTTATTAGCTCACGTTTGTGGTATTTTGACCTTTCTATAACATCTACAACTATAACTTCTTATATCTTATGCCTTCTTACAAATATTTacagatttttaaaataacaaaacaataaagccTAACCAGACA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002501 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_032223010.2. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR026172 all species →	Family	Gamma-secretase-activating protein family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13630 all species →	GAMMA-SECRETASE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:1902004 all species →	Biological Process	positive regulation of amyloid-beta formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032223010.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032223010.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

34TPM > 0

16Conditions

3.7Max TPM

1.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.27	0.81
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	1.22	1.77
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.59	2.22
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.36	1.48
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.26	2.90
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	1.88	3.65
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	0.99	1.67
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	0.53	0.94
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	0.73	1.26
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	0.91	1.44
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.13	1.47
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	0.71	1.07
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	0.61	1.05
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.38	1.13
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.19	1.94
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.50	1.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.81
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.77
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.00
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.88
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.22
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.46
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.09
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.48
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.31
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.29
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.90
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.38
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.50
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.65
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.67
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.31
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.94
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.64
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.26
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.94
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.44
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.30
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.47
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.99
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.93
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	1.07
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	1.07
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.05
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.80
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	1.13
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.94
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.62
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.51
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.