Genomic Location: NC_064040.1:6891854...6901625
NR annotation: XP_032223945.2, poly(A) polymerase gamma isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5499361 |
| Transcript |
| rna-XM_032368054.2 |
| Protein |
| XP_032223945.2 |
| UniProt accession | Description |
|---|---|
| Q6PCL9 | Poly(A) polymerase gamma OS=Mus musculus OX=10090 GN=Papolg PE=1 SV=1 |
| Q9BWT3 | Poly(A) polymerase gamma OS=Homo sapiens OX=9606 GN=PAPOLG PE=1 SV=2 |
| P25500 | Poly(A) polymerase alpha OS=Bos taurus OX=9913 GN=PAPOLA PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001969 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20750 all species → | PAP_NTPase | Poly(A) polymerase nucleotidyltransferase domain | Domain | Interproscan |
| PF04928 all species → | PAP_central | Poly(A) polymerase central domain | Domain | Interproscan |
| PF04926 all species → | PAP_RNA-bind | Poly(A) polymerase predicted RNA binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR048840 all species → | Domain | Poly(A) polymerase, nucleotidyltransferase domain | Interproscan |
| IPR011068 all species → | Homologous_superfamily | Nucleotidyltransferase, class I-like, C-terminal | Interproscan |
| IPR014492 all species → | Family | Poly(A) polymerase | Interproscan |
| IPR007012 all species → | Domain | Poly(A) polymerase, central domain | Interproscan |
| IPR043519 all species → | Homologous_superfamily | Nucleotidyltransferase superfamily | Interproscan |
| IPR007010 all species → | Domain | Poly(A) polymerase, RNA-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10682 all species → | POLY A POLYMERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0016779 all species → | Molecular Function | nucleotidyltransferase activity | Interproscan |
| GO:0031123 all species → | Biological Process | RNA 3'-end processing | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:1990817 all species → | Molecular Function | poly(A) RNA polymerase activity | Interproscan |
| GO:0004652 all species → | Molecular Function | obsolete polynucleotide adenylyltransferase activity | Interproscan |
| GO:0006378 all species → | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14376 | PAP; poly(A) polymerase | EC:2.7.7.19 | Messenger RNA biogenesis | ko03019 | deepkoala |
Transcript abundance of XP_032223945.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
