Gene detail

Detailed information of XP_032224633.2 in Nematostella vectensis

Genomic Location: NC_064040.1:4787836...4792155
NR annotation: XP_032224633.2, zinc finger C2HC domain-containing protein 1C [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032368742.2

CCAATCATAATGCAGAGAGGTGAAATTTGATGCCACGCGACAGCGCTCATGTACAGAAACACCGTGACAAGAATTGAACTGTGTCGAAGGGACTTGTAAGTGAATATTCACGAGATTCTTAATCATAGTGGCGAAATTATACCCATCTCAAGCCTAAAAGaTTTCCCTGGCTGTTGAGTTGATGGCAGAGCCTGTCTCATACGAGTTCCTGTCTTGTGTGAATCTACATCGCCCTCCATTCCCAATGCAAGATCTTGCATCCTCCTCTACCCTTACAAGTATGCCACAAAGCATGCAAGGCAATGGAGTATCCCAAAGACAACCCAAGTATTCTCGTCTTGAAATGATGAAATTAAATATTGaaaagaagaggaaaaaaGACGTCCAAGACAGGCGTGAAGTTTCACAATCAAATCCACGGAATGCCAAAAGTGGCGGTACAGTTCGTGCATTCTTTGCTGAAAGAAGAGCAATGGAAGcagaagccaaacaaaaagaaaatgcagCATACTTACCTCCAATTGATGCACACTTTCGACAAATGAAGGGACAAAACCCTGGAAGTTTAGGTTCTCCACAGAAAAGTCCACAAGTACAAAACCCCTCACCTGGTCAGCAGGCTCCAAGCCATGGTAATGTAAGGAACATGTATCATAGGAAGAAAGGTAAAGGAGTTGATAAACAAAACCCTTTGCCCCCATTGCATAGAGATGCTGTGAACCCCCAtaaaccccccacccctaacAACAGATACGAGACACATGCCACATTAGTAGCGCAGGAGGATACACCAGAAATTGCGCCCAGTTACAACATTAATGCACCCATAAAGAGACGTGGTGGGGGAGGTACAGTTGTTCCAAGAGGTGCACCTCGAAAACAGCACATTCCTCAAGCTCCACCTAAACAAAGAACTGCTGCCCTGCAGAAAACAAAAGTGCAAAATGTTCCTTTGCCAAACGATGATTCAGATGGTGACATGGGGCATGATTTCAACAGCTTGGATGAACCCCCTCCAAATCTATCAAGATTAAAAGCATTGAGGATGAAAAAACTAAGCCAGCAGAAAATAAGCCTTCCTAGTAAGCCTGAAAAATTAACAGACTTTCAAAAGTGGCAAATAGAACAGGATAAAGGAAAAGAAGAGAGATTGGAAAAACACAGACAAAAGATGGAGAGCAAGGGAGAGTCACTATCCTTACGTGAAAAAGAACTTCTTGAAAAAATCCAAATGGAGCAAGAAAAACTGCAAAGAATTAAACAACAGCAACTTGAACTTGAAAAGCAAGAGCGcttggagagggaagaggagGAAAGatttaataaaacattaaaaaaagcaGTCTTTGAAAGAGATGAAAGTTTCGTGGAAGAACCACCAAAATCTGTTAAGATTTTAAAGCCTGCAGCTGATGTAACACCTAAGAAACCGAAGAAAGTGAAACACAAACCAGTTATTGCAGACCCTGTACCTGTGGATGAAGAAGAAGAGCCAAAAGAGGACTTCACAAGTTTCTATATTCAACAAGCAGAAAAAGCTGCACAAGAAGTTGAACTAGACCTGTCACCATGCTCTATATGTGGGCGTAATTTCCAGACTGATAGGCTggaaaaacaccaaaaagTGTGTGCAAAGAACTCCACCCGCAAGAGGAAAGCATTTGACATGACCAAGCAGAGAACCGCAGGGACTGAACATGAGAAATATGTTAAAGCTGGTGCTCACAAACAGgaaccagaaaaaaagGCTCGAAAAATAGACTGGAGGGCCCAGCATGAGAGCTTTATCAAGGCCATCCGCTACGCTAAGGGGTCCAGCGATGAGCCACCACCTGTTATGGAGAATCCACACTATGTGCAATGCCCTCACTGTGAGAGAAAATTCAACCCGGAGACAGCAGAAAGACACATTCCAAGGTGTAAAGACATCAAAGCCAgacctgcacctccaaagggAAGAAACAAAAGATAAACCATAGCTTATACAGTAGTCTGATTTTGGAGAATAGATGAATAATTTATATATAATTCAAGATGTCATTTTTATTGTGAGACAAATCTATTTATATTTAGGTATTTTAGCATTAAATTAGTGAAAAGTATTATAAACAAGTGCTAAAATATGTACAGAATTTTACGGCCCTGGAGGTTTTACATTCTCAAGGCAACTTATATTAGGGAACTTACTTTTTATGCCTTATATATAAAAgacttatttttttgttacgaAGTGAAGTAACTATATTTTTCTAGCGCAATTCATACACAAGCCAAGAATTCAAAACCCGCATCACTGCCTTTTAAAGTTGGATTGTGTTGCTATTCCTAAACAAGACAAGGGTTTAGACTTCTTAGGTGGGTGCAAAcagaacaatttgaaaacaataCGCTTTGGGTTATCTTGTGGACTGTGGAAAATGtgccattttgaaaacaataacatacTGCTCTTGGTGCACACAATGTAAACGAGCAAAACAGTGGGCATACGCATGTGCTGTACAGCTTGTAATCATTTTTGTATCagatatgaaaaaaaaccAGATATATATGGAGATGGGATTCAGTAGTTATTACAGGTATCCTGCTTTTATCTATACTCCTGGCCTTCATTTAGTAATAATATTATACCAAACTATAAGTATTGTTGCAAGAAAATGTTAGGAGATGTAAGAACAGTCTACACAATGGTTTGTGGTCCTTCAtctataacaaaaaataaataaacaacatTAAACATCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001620 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13913 all species →	zf-C2HC_2	zinc-finger of a C2HC-type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026319 all species →	Family	Zinc finger C2HC domain-containing protein 1A/B-like	Interproscan
IPR049899 all species →	Domain	Zinc finger, C2HC/C3H-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13555 all species →	C2H2 ZINC FINGER CGI-62-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for XP_032224633.2 in Nematostella vectensis.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032224633.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032224633.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

39TPM > 0

16Conditions

31.3Max TPM

5.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	3.86	6.17
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.35	5.31
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	12.60	18.70
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	6.96	8.46
whole 6 week old aboral regenerate · regenerate uncut	3	3	6.49	12.20
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	14.53	31.34
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.62	4.57
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	6.26	11.46
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	4.62	11.05
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	7.76	10.44
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	5.87	7.20
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.40	3.78
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	3.36	4.37
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	3.58	10.73
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	3.14	6.99
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	3.53	10.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.17
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.41
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.31
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.67
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.06
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	18.70
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	13.41
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.69
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.46
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.95
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.48
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.20
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.16
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.10
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	31.34
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.68
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.59
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.57
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.30
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.46
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.21
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.11
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	11.05
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.83
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.44
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.79
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.06
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.20
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.61
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.81
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.78
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.43
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.37
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.04
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.67
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.73
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	6.99
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.42
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	10.58
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.