Gene detail

Detailed information of XP_032224958.2 in Nematostella vectensis

Genomic Location: NC_064046.1:10810478...10817649
NR annotation: XP_032224958.2, glycosylphosphatidylinositol anchor attachment 1 protein [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032369067.2

ATGCTGTTCGCAAGAGTTTTATGCGCATGTGCAGATGAGTAGTGTCCAGGCCTCACTCAAAATTCAATATGGCGGCAGGAATAATGTCGAAAAGAGTTGATTGAGTAGAAGAAAGAATTACAGACGAATCATCTTCAGCTATGGGCATTTTGTCTGACACAAAAGGAAGAAAACAGATTAGTCAAGCCCTTTCAAAACATTACGTCAAATTATGtGTTCTAAGTTATGCTGCTGGCATTGTTTGGATGTGTGCTCTGTCAGATTCACAGTTCAACAACAGGACATACTTCTCAGAAAATGCCCTTTTGCCTGGAATGGTAAATGATGACTACTACAATCACAAGGCTGCAAACAGCTTGTACCGGGAGCTTCAGGCTATAAGGGACAAGACAAAAGTCCCTTTAAAGTGGATTTCCAGCAAGCTGGCTGATTATGGAATCCAAAGCTACCATCAGAACTTCTCAGCTCAGATACCACTTCCTGGAAAAACAGATCCACTAGTTACTGAGGGCATTAACATACATGGTGTGTTTAGAGCACCAAGGATAGCTGGCACAGAGGCTATTGTGATTTCTGTCCCTTACAACGATGGTAGAAATATGGGAGCCTTGGCCCTGATGTTGTCTCTTGCTGAACATTGCAGAGGTCATAGTTATTGGTCTAAGGACATTATATTTTTGGTAACTGACAAAGAAGCTATTGGAATGCAGGCATGGATTAATGGCTACTATGCATTGCAGAATACATATATCAGTTCCTCCCAatttgaagggcactctggtgcTATCCAAGCTGCCATTAACCTAGAGTTGTCTTCCGACTCCCTGGATAGTGTTGAAGTGTTGATAGAAGGACTTAATGGACAGCTACCAAATCTGGACCTAATAAACATGGTGTTGCGACTCCTTAATAAGCATGGCATACCTGCCATGGTACACTCCCAGCGTAATCATCCACGGTTTTCAGGCCATGGCCCACCAGTTCACAATTTGGTTTCCATGGCTATGATGATGCTTCGTCAAGCTTCTGGCCTTCCATCTGCCAATCATGGGATGTTTCACAAATTCCGTGTTGAGGCTGTGACTTTGCGGGGAGTTAAAGATGGAAGATATCATCAGCATGGTTTCTACAATATAGGGAGGGTACTAGAGGGGATATGCAGAAGTCTGAACAATTTGCTTGAGCGCTTCCATCAGTCATTCTTCTTCTACCTGCTACCCTCACCTGGTCGGTATGTCTCTATCGGGATGTACATGCCCCCCTTTGGATGCTTGCTGCTAGGACCTCTTATCACTGCGGTTCTACTGTGGTCTGCGGCCTGTGAACCTAATGATACTCAGGCAGCTTGCTCAAGCATTCAGGATGGTACTGAGAAAGTCACTGAGGAGTGTGGAGCTGAAGACAAGGCTGTGAAGGATGTTGATGGATCTAAACAAAGTGAACATGTTGATGAATCTGTTTTGAGGCAAAAGGTTGCGTTTGCATGGAGCCCTCCCCCCTTAGGCAGCGTGGTCCCTCTTATTGTCCTGTCGTATCTGGGAGGAACACTCCTCCTCTTCACGCCATACGCAGGCTACGAATTGGGCGTGGTACTAGACAGGGATCccgtgatgacgtcactagggTGTCTCACAGCGGTTGCCATGGTTATTATCAGTTCACCTGCAGTCCTGAGGTTATTCACCCCTCCGAATAACTCAACCAGAGAGCTACACATGCTTAAATGCGCCTCACTTGTTCTGTACTCCGCCATGCTCGCCTCCATCGCCGCCGTTAATTTCTCTCTGGCGTTCTTCATTGCTCTGCTGACTATCCCGGCTTATCTCTACGTTTCTCCGAAAAATAACCGTATTCATCGTCTGCTGCAGTTAGCTCTCCTGCTTCTTGCGTCACCGCTATCGATTTATCTCATCCTCTCCTTCTTCTACAACTTCATAATGTCGCCTGATTATCTGGACATTACTACCATAGCGAACGTTACCATGGAGAAAGTGTTCCCTGCGCTGATTGGTTCTTTGAGGGATGCACAACTTCTGGACACGTGGACCTTTGTCGTGGCAGCATTGGGAATTGTGCCTAACTGGACGATGTTTTGGTATCTTGGCTGGCAATAACTGGTCAATGGCCTAATGTCTGGAATAGGATTTTATTGACGATGTTCTGGTTCCTTTGACCAATACCGATTGAACAGTGTTTGGTATCTTGGCTGGTAACAGTTGTCGAGGGTCTGATATCTGAAATTAGGATTTGATTCACGATGTTCTCGGTACTGTTGACTAATACCTAGTGAACATAGTTTGATACCCTGTCTGGTAACAACTTGTTAAATTGCCAGTGACTGGGCAACATGTTGTATGCCGACAGTAATTAGCTGGGAGTTTATGGTTGGCAGAACTAGGAAATGTTCTGAAATCATGGCATTGCATTTCCCCTGCTTTTATCGACTTGTACCTTGAAAATAATATGGCTGGAAGTAACAAGACGACAAAGTTTGCTATCTTGGGTGTTATCTTGACGGACAGTAAAGTCATGGGGCGCGGTAACTGGTATTTTTACTTTCAGTAATCGGGCAGTAAAGTCATGGCGCGCGGTAACTGGTATTTTTACTTTCAGTAATTGGGCAACGTTTTGTAGAAGCAGGGGAAGTGTAACTTAGTAAACTTAACATTAGAGTCTCTAAATAAATTGTGACGATCCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WTK3	GPI-anchor transamidase component GPAA1 OS=Mus musculus OX=10090 GN=Gpaa1 PE=1 SV=3
O43292	GPI-anchor transamidase component GPAA1 OS=Homo sapiens OX=9606 GN=GPAA1 PE=1 SV=3
Q9US48	GPI transamidase component gaa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=gaa1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004822 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04114 all species →	Gaa1	Gaa1-like, GPI transamidase component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007246 all species →	Family	GPI transamidase component Gaa1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13304 all species →	GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05289	GAA1; GPI-anchor transamidase subunit GAA1	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032224958.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

41TPM > 0

16Conditions

22.8Max TPM

8.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	12.61	16.54
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	8.07	10.18
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	10.20	10.67
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	8.77	9.38
whole 6 week old aboral regenerate · regenerate uncut	3	3	8.79	9.31
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	10.26	22.82
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	6.97	11.43
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	8.72	12.54
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	6.05	9.69
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	10.82	12.95
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	9.10	10.09
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	13.54	19.56
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	11.19	12.04
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	7.66	12.00
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	6.80	10.44
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	3.05	9.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	16.54
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.35
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.94
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.18
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.25
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.79
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.67
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.98
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	9.95
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.38
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.71
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.23
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.31
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.09
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.97
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	22.82
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	7.95
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	11.43
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.47
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.54
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.37
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.24
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.69
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	8.48
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.95
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.55
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.95
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	10.09
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.77
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.46
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	19.56
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.90
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.15
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.04
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.17
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.38
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	12.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.99
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.44
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.96
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	9.16
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.