Gene detail

Detailed information of XP_032225516.2 in Nematostella vectensis

Genomic Location: NC_064044.1:3067628...3074611
NR annotation: XP_032225516.2, enolase-phosphatase E1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032369625.2

GAATCAAaataaaggcaaaaaaaattggcgCGAGGGATCCTGGGTAAAGGGAAACTCAGCGGTTTTATCCAAATTGCCTATGCTCAGGCGCAGCAAGCTGATGACAAACGGCGCTATATTCAAATTACGGCCAAAGAGAAGCTCGGAAGGGAAGGTTTGCATGGGATGCAGGAtgggaaagaaagaaaataagaatgcCGAACAAATGGACGAGGTGATGGAGAAGCTAGCTGATCTTGATATACCAACACTAAGCAGGAAGGATCTCCAGTCATTTTGCAAGCAGTTTGGACTCAAAGCAAATGGCAAGACTTCTGAGCTAATTAATAGGCTACAAAGTCACATCACCAAACAAGGAGATAATGGACTGGTGCATACTGATAATAACAACACAAAGGTTGACAAAAGCCAGAAACATGAGGATGGGTCACAGGCTTCAAGACAAGTACCTgccaaaagaaaaagaaaaaaccaGGAGAAGAAGAAATCAGAAGAACCCCCAGAGTATGaggttgtagatggtgactcTTCTCAGAgttcaaacacattttcagGCCCTAGTTCAATTTCTGAACCTTCTGAAAGTAGTCCTGCAGACAAAAGAAATAGGAGTGGTGAATTGACTCAATCACAGAACGATAATAAAGAGAGGAAAAGACAAAGAAAGGAAGTCGGCAAGTCAGTTGAATCAgacaatgataataaaggAGGAAGATCTAGACAGATAAAGAAGATCAAGAAGGATCACTCAGAGCCAAAGCAGAGTCACACAGAAGAAGAATGTGACAATGAAGTTTGTAAGACACGTGCCAAAGCTGAGACCAAAAGGACTGGTCGTCAGAGCAAGAAACCCAAACAAGCCAAGTCtgccaaacaaaacatgagCTCAGCACAATCTGAAAATCCTGAAGCAAATAAACTGGATTCTAAGGAGGTAGATTTGTGTGTAAAAGACTCAGATCAAATGGATGTTTCTACAGGAAATAGCAGGAGTTGTGAGTCAGTAGAAAGTGCCAATGTCTGTGGGGATGCTGTTGATGATACCTCCAGGACACCTGGAAATCAGCGTGAGGTGATAGTAGCTGATGATGTCTGCTTCGagacatcaacatcatctggCTGTGATTTGTCTTCCACTGAACCAACAACAGGTGTAAAGGACGCTGCCAACAGAACTTTCACAATACCAAGAACAGTGGAGAACACTGTCAATGAGACTGGTAAAGTTGAAAATGATTGTGTTCAAAGTTCTTCCGAAGTCCTCCAATCACAGGATGTTACCAGCTCATTGCAGTGGTGCGTTGCCCACGGGGCGATAAGGAGCTTTAACAAACTGACATGGAAGCTCATCCGCCTTAAAGGGGGCCGCCCTGTTGTACCAAACAGGTTCGGCAAATATATTCCATTTACCCTCACGCCCAGCCAACTGATTGTGCCGACTGGTTTTCAAGACAACTTTATCTGCGAGGAATGTGTGAGGAGTAATGAGACAATTTCTAACGTCGAATGTGAACAGGAGGTTAAAGAAAACGTCACTCCCTTGACTGGCATTTCGCGGGAAAGCATTAGAGCTTCTATCAAACGCAAACGTGAGGAGGAAATGGGTGGGACTGGATCTGAAGAAGTGAAtgctgaaaacaaaagacgacGTAAATCAGTACCACGTTCTGCAGGGACCTCCCCCCTCACTCCAGCCAGTCCTGATATCAGGAAAGCACGAGGGGAAACGCTAGCCTTGCCAAGaaatctTTCAAGGCCATGGCAGCCAAAGAAGCGATCTCCAGGTGTTAGCACCACAGTCCAGGAAGATCAAAATTTTGCCAAGAAAGTCGAGGATATTATCCGTAATGTCGTACCAGGCTCTGACGAAGAGCTACTGCTCATTATGGGCAAGAAGAGTCACGTGTCCCACTCGCCACCAAGGGCGTGAGgttaGAAAACAACAGAAGAGTCTACACACGAGCTTTCGACATCGCCACGACTACCGCATGTTTATGCAAAGTGAACTTTTTTCAatttagttttatttgaatGTAATTTACTTTTCCAGTAAATTAAATTAACGTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009293 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14047 all species →	DCR	Dppa2/4 conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025891 all species →	Domain	Developmental pluripotency-associated protein 2/4, C-terminal domain	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR039590 all species →	Family	Developmental pluripotency-associated protein 2/4	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16073 all species →	DCR DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0048731 all species →	Biological Process	system development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032225516.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032225516.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

29TPM > 0

16Conditions

2.1Max TPM

0.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.44	1.31
whole 6 week old aboral regenerate · regenerate 144hpa	3	2	0.42	0.69
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	0.53	0.74
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	0.43	0.60
whole 6 week old aboral regenerate · regenerate uncut	3	3	0.45	0.63
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.17	0.50
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	0.76	1.19
whole 6 week old aboral regenerate · regenerate 36hpa	3	1	0.26	0.78
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	0.35	0.54
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	0.25	0.46
whole 6 week old aboral regenerate · regenerate 16hpa	3	2	0.26	0.42
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	0.90	1.40
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	1.19	2.13
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.59	1.78
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	0.34	0.61
whole 6 week old aboral regenerate · regenerate 12hpa	3	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	1.31
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.69
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.57
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.00
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.74
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.49
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.35
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.60
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.40
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.28
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.63
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.38
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.34
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.50
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.19
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.10
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.78
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.54
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.51
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.46
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.28
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.42
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.36
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.00
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	1.40
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	1.29
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.13
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.45
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	1.78
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.61
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.42
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.