Gene detail

Detailed information of XP_032225580.2 in Nematostella vectensis

Genomic Location: NC_064044.1:5921547...5928494
NR annotation: XP_032225580.2, zinc transporter 2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032369689.2

ACAGGTCGTCAACAGGTGGCAAACATCACGATCAACAATTCTCGAACTCTTgatcgtgaaacgtgattaTCGCCATGAAAAAATCGTCGAGTAATCCTACGAGAAGACTTCGCATTGCGAGTTTTCTATGTCTGTTTTTTATGATCGCGGAATTTGTAGGGGGTTATTTTTCAAACAGTTTAGCCATCATGACAGACGCTGCCCACATGCTATCTGACTTCGCTGGGTTCATGATTTCTTTGTTCGCAATCTGGGTCGCGACAAGACCTGCGACCAAGACGCTCTCGTACGGATGGTATCGCGCGGAGGTTATGGGCGCTGTTCTCTCTGTCCTTGTTATATGGGTGCTAACGGGGGTATTGGTTTATATGGCGCTTCAAAGACTCATCATGAAAGAATATGAAGTTGACGCCAAGGTCATGTTGATCACTGCATCGGGAGGACTTCTCATTAACGTCATTATGGGAGCCATTTTATACCAAAAGGGTCACGGTCATAGCCACGGGGGTATGAGCGGTCACGGTCATAGTCACACAACGAAAGGTCAAAGTCACAGTCACACAAGCCCTGGCAAGTCACCGTCTAGTGTTGTCACGATAGAGGAAGAAGAGAACGTGAACGTTCGAGCTGCGTTTATTCATGTTATCGGTGACTTCTTGCAGAGTCTTGGAGTCTTTGTAGCGGCGCTTATCATTTGGTTTAAGCCTGAGTGGGCGATAGCAGATCCTATATGCACTTTTATATTCTCTATCATCGTATTATTCACCACGCTGGCAATATTAAAAGATGCACTCATAGTACTTATGGAAGGTATGCCTAAAGGCCTGAGCTTCAATGATCTCAAGACTAGCTTAACAGCGATACCTGGGGTGGAGGCTGTGCACGACTTGCACGTGTGGTCTCTTACAGTCGGCACTGATGCTCTTTCAGTTCACCTAGTTGTAGATAATAGCGCAAACACACAAGATATTCTAGAGGCTGCCTCTCAAGTGTGTAGCAAGAGTTTTGACATTCACCATAGCACTATTCAGATAGAGACTGACAATGGGAGCCGCAAAGAAAGCTGCAAAAAGTGCGACGACCCACAAGACTAGAAAATCAACCCTTTCCTTTTAAATTCTCCCTATACTTTTGCGTGCTACACAATGATAGGGTTGGTAGAATTCGGCGATCATTTCATCTTAAATATCGAAATAATACACATAATTCTCATTGACTTACTGCTTGATCGTTGATCTTGGATAAAATGGAGTGTCAAGTTGAACATTTTCTGGAGGATATATGAATGCATGGCAACACCTACACTTATTGTACGGTCATAGTACTAGTACAGTTACACGTGACTTATAGCAAGCGAAATTGCGGTGCAAGGAGATCTTGTTGCAAGGCACAGCCACTATATACGGAGCATAGCAGCAGGATAGCACAGTGTGGTCTTATCTAATCACAAAAATTTTCATCCTCACGCGCCAGAGCTCGACGTTTGATTCTTAATGGAAAAAGGGGGCTTAAAGTAAGCTGACACGTGACCAGCACTCACCAGTGCCCAACCTCTCCTAGCCCCTAGGCTCTGCCTAGTTTCCAGGGCCCCCACCCTGAAAGGGGAAAGGTTGGTGTGGGATGGACCCTAGCGCCCGAGGATGGGTAATTGTTAGGTCATTATACGATAACAGTACACACATGTGGCAAGGAAATACCGCCATTCGCCATTCTTTCGTTGCGCCGGTGATTGGGTCGAACAGCATGCTGGGACGAATTAAGGTGACGCAATCCAACATGGTGGCGTAATGTTGATACTGAATGGAAGCTAGCAAATGATAGGATTTGGCAATTCTGTTCCTGGAATACCTTCGTTAGTTACATCACAATATCAACATTGAAGTCGTTCGACGCCATGTTGAAATGAGTCCCCTAAAATCATCCCAGCATGCTGTTCGCTTATCAACTCGGCCCAATCCCCGCGCAACGTAAGAATGGCGAATATGGTTGAGTTACAGCACCGACAAGGCCCGAACAAGGCATGGTAGAAATACAGGGCACACTTTTTAGTTTAGATAGGAGTAAAGAATTGTTTTAGGACATGCTTGAGGTTCCAGTgcctttcttttttcgcacGGTATGCTTGTCCACGAACATGACTTATGATAAAATTGAATTACATGGTATGTTTGTAAATAAAGGAATTGAACCAGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BRI3	Proton-coupled zinc antiporter SLC30A2 OS=Homo sapiens OX=9606 GN=SLC30A2 PE=1 SV=2
Q2HJ10	Proton-coupled zinc antiporter SLC30A2 OS=Mus musculus OX=10090 GN=Slc30a2 PE=1 SV=1
Q62941	Proton-coupled zinc antiporter SLC30A2 OS=Rattus norvegicus OX=10116 GN=Slc30a2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001455 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01545 all species →	Cation_efflux	Cation efflux family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027469 all species →	Homologous_superfamily	Cation efflux transmembrane domain superfamily	Interproscan
IPR050681 all species →	Family	Cation Diffusion Facilitator/SLC30A	Interproscan
IPR002524 all species →	Family	Cation efflux protein	Interproscan
IPR036837 all species →	Homologous_superfamily	Cation efflux protein, cytoplasmic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11562 all species →	CATION EFFLUX PROTEIN/ ZINC TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0010043 all species →	Biological Process	response to zinc ion	Interproscan
GO:0061088 all species →	Biological Process	obsolete regulation of sequestering of zinc ion	Interproscan
GO:0071577 all species →	Biological Process	zinc ion transmembrane transport	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0008324 all species →	Molecular Function	monoatomic cation transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032225580.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032225580.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

19TPM > 0

16Conditions

2.2Max TPM

0.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.47	1.41
whole 6 week old aboral regenerate · regenerate 144hpa	3	2	0.98	1.77
whole 6 week old aboral regenerate · regenerate 0hpa	3	1	0.11	0.34
whole 6 week old aboral regenerate · regenerate 2hpa	3	1	0.07	0.22
whole 6 week old aboral regenerate · regenerate uncut	3	3	0.49	0.58
whole 6 week old aboral regenerate · regenerate 4hpa	3	0	0.00	0.00
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	1.15	2.19
whole 6 week old aboral regenerate · regenerate 36hpa	3	0	0.00	0.00
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	0.07	0.11
whole 6 week old aboral regenerate · regenerate 20hpa	3	1	0.07	0.20
whole 6 week old aboral regenerate · regenerate 16hpa	3	0	0.00	0.00
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	0.51	0.84
whole 6 week old aboral regenerate · regenerate 60hpa	3	1	0.10	0.31
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.10	0.31
whole 6 week old aboral regenerate · regenerate 8hpa	3	1	0.06	0.18
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.15	0.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	1.41
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.77
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.17
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.00
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.34
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.00
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.00
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.22
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.00
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.00
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.58
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.52
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.37
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.19
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.25
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.11
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.10
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.20
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.00
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.84
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.69
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.31
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.31
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.18
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.44
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.