Gene detail

Detailed information of XP_032225771.2 in Nematostella vectensis

Genomic Location: NC_064041.1:6405676...6417187
NR annotation: XP_032225771.2, probable inactive purple acid phosphatase 2 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032369880.2

CCAGCATGCCATGCGATAAcactcaaaacaaaaaatgtcgTAAAAAATTGGTTGCAAAAAGTACTGAAAGAAACTTCATTTTgacatatttattttgttattctttTTGGGGATGCACCAATTGCTTTGCTTTATGCATTACTTTCAAAATATGCTGTTGAAAGCCGAATAAATAACACAGCCAATCCAGTACAAGGATTAGAAGGAACAAAAGAATCTGTGAAGGTCACGAGATCATAACATGTCACAAAAACATAGTTAAGACGAATATTGCATAAGTTACGAGAAGTACTTGCCCTTGCGAATCACACGAGACAGTCGAATGGTCACTCTTGCTCTGCATTTGAGTAGTGGGTAAGAACTAGCAATATCTACCGTGAAAACCCAGCGTTTTCTCTTGGAAATGGGGGTTTCCAGGCTTGTGTTGTTGGTGGCTTTGAATGTTATTGTGTCGCCACATCTCACAGCATCCCACTCAATACCGACGTATTTCAATCGTTTAAACCCTGATGGCAGCCTGATGGACGTAAAGAGCCCGGGATACTGGATCAAACTCCCTACGATGGACCAAGAACCTCTAAGGAACCCCCAAGACTACAAAGGCACACTGAAAGTCCACCCCTCTGTGATTGACAATGCCGAATCATTGACTGTATCTTGGCATAGCATACAGGGGGCGAATATGACAGATTTTATTGCATTGTACTGCCCAGCCGAAGACACACATGATCGATTCCTTGACTACTTATATTTAAATGAGACCAAGACTTTGCACAAGTTAGGCAAGGGTTTTGTCCAAGTGAAGCTGTACAACATGAGGGTGTCATGCGAGATGAGGTACTTTTCCTATGACGGGCATGGTGTCCCTGTGCTAAAGGCACGTAGTAATACAGTGGAGTTCAAAGGAAGATCTGCAATTCCTCTTCAAGGCCGGATAGCACTGACAGGGGACCCAACTGAGATGCGTGTTATGTGGACTTCAGGAACAGACTCCAACCCCGTAGTGATGTATGGCATGAATAAGACCTTGACACACAAGGCTACTGGCAAGTCCTCCACCTACAGGGCCCAAGACATGTGTGGCTTTCCAGCAAATGGAATTGGATTCCGTGATCCTGGGTTCTTACATGATGTGCTGATTGCAGACCTCAAACCTGCAACCAGATATTTCTACCAATATGGCTCTGAAGAGgcCATGGGACCCATGCTAAACTTCACCACTGCACCCATCCCAGGTGCTGATGTCCCTGTCAAGTTTGTAGCCTACGCTGACATGGGCGTGTCACCCACTCCTGGTGCAGAGGTTACGGCAAGGTACTCCCTGGAAGAGGTCAAGAATGGTGCTGAGCTAGTTCTACATTTTGGAGACATTTCATATGCAAGAGGATATGCATATCTATGGGATAAATGGCATTCTTTGATTGAGCCATATGCCACCCGTGTCCCATACATGGTCGGTATTGGCAACCATGAGCAAGACCACACAACTGGTGCTTCCAAAGACCCAAGTGGTGCAGGCAAGGGCTTCCACCCCTCCTGGGGGAACTTTGGTGACGACTCAGGGGGGGAGTGTGGGGTTCCTATGTTCCATCGCTTCCACATGCCTGATAATGGAAATGCCCTATGGTGGTATAGTTTTGATTATGGGAGTGTCCACTTTGTCATGATGAGCACTGAACATAACTTTACACGAGGCTCCACCCAATACAAGTGGCTTGAGGCTGATCTGAAAGCTGTCAATCATAAGGTGACCCCCTGGATCGTCTTCATGGGTCACCGCCCAATGTACACAAGCCAGCTGGTCCTCAATAAAGATCCAATCATCGCCACCCACATGCAGCAGGAGTTTGAAGATCTGTTCTACAAATACCACGTGGATCTTGCACTTTGGGGTCACTATCACAGCTACGAACGGACCTGCCCCGTCTACAGACAAAAATGCACACCAGGGGGGACCACAAATGTCGTCGTTGGTACTGCTGGCTACGTGCTCCTGTTGACGCCGTTTCCGTTTGAAAGAAAGCCTTGGTCCGAGTACCACTCGGTGCATTATGGGTATGGCAGGGCCACAGCTGTCAATAGCACTGCGTTGCTATGGGAATGGGTGAAGAACTATAACCATGAGGTGGCTGATAGGGTGTGGTTACGGAAGTGACGTCAATAATACCTACCTTTTCAGCGAAATTTGATTGttatacaataataataattgtctGGATATCAAAGCGTTTGAAACAAGCAAACTGAggctaaaaaataaatttgataTTGAATAATTGGAAAGGAGTCTAGTGGTTTTTTCTTACGGGATTTGACCCGTGGCACCCGtgataccctgggtaccagagtctcGAGCTTCGTCCGTTCGTTTACTGAACGAAGCTCGAGCAGCCAGTAAAGGGTGCATagtaaacgaacgaagctcgagCAGCCAGTAAAGGGTGCATagtaaacgaacgaagctcgagCAGCCAGTAAAGGGTGCATagtaaacgaacgaagctcgagCAGCCAGTAAAGGGTGCATagtaaacgaacgaagctcgagCAGCCAGTAAAGAGTGCATagtaaacgaacgaagctcgagCAGCCAGTAAAGAGTGCATagtaaacgaacgaagctcgagTAGCCAGTAAAGAGTGCATagtaaacgaacgaagctcgagCAGCCAGTAAAGGGTGCATagtaaacgaacgaagctcgagCAGCCAGTAAAGGGTGCATagtaaacgaacgaagctcgagCAGCCAGTAAAGAGTGCATagtaaacgaacgaagctcgagCAGCCAGTAAAGAGTGCATagtaaacgaacgaagctcgagTAGCCAGTAAAGAGTGCATagtaaacgaacgaagctcgagCAGCCAGTAAAGGGTGCATagtaaacgaacgaagctcgagCAGCCAGTAAAGGGTGCATagtaaacgaacgaagctcgagACTCTGGTAGCCAGGGTGTAGGCCAGACAATCATATTAAATCGCGGTACATGTTTAGCTTATAAACTTGTAAAACTTGCAAGatcatcaataaaaaaaaactattctA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9LMG7	Probable inactive purple acid phosphatase 2 OS=Arabidopsis thaliana OX=3702 GN=PAP2 PE=2 SV=1
Q9ZQ81	Probable inactive purple acid phosphatase 9 OS=Arabidopsis thaliana OX=3702 GN=PAP9 PE=2 SV=1
Q8H1R2	Probable inactive purple acid phosphatase 24 OS=Arabidopsis thaliana OX=3702 GN=PAP24 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001443 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16656 all species →	Pur_ac_phosph_N	Purple acid Phosphatase, N-terminal domain	Domain	Interproscan
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF14008 all species →	Metallophos_C	Iron/zinc purple acid phosphatase-like protein C	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008963 all species →	Homologous_superfamily	Purple acid phosphatase-like, N-terminal	Interproscan
IPR015914 all species →	Domain	Purple acid phosphatase, N-terminal	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR041792 all species →	Domain	Purple acid phosphatase, metallophosphatase domain	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR025733 all species →	Domain	Iron/zinc purple acid phosphatase-like C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45778 all species →	PURPLE ACID PHOSPHATASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003993 all species →	Molecular Function	acid phosphatase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22390	ACP7; acid phosphatase type 7	-	Others	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032225771.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

46TPM > 0

16Conditions

56.9Max TPM

29.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	32.29	37.46
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	24.81	30.62
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	30.92	34.70
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	34.49	38.64
whole 6 week old aboral regenerate · regenerate uncut	3	3	24.69	27.62
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	20.88	31.62
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	33.29	39.64
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	31.37	36.56
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	21.14	29.44
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	26.27	26.74
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	25.52	28.18
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	28.80	35.28
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	38.18	46.90
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	41.37	56.92
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	21.65	32.79
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	30.99	32.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	37.46
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	35.92
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	23.50
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	30.62
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	25.07
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	18.74
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	34.70
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	29.40
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	28.65
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	38.64
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	34.78
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	30.06
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	27.62
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	25.49
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	20.95
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	31.62
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	31.01
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	39.64
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	32.39
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	27.85
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	36.56
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	31.02
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	26.52
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	29.44
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	21.72
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.26
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	26.74
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	26.19
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	25.87
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	28.18
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	27.02
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	21.37
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	35.28
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	28.61
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	22.50
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	46.90
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	35.45
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	32.18
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	56.92
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	35.04
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	32.14
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	32.79
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	32.14
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	32.75
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	30.40
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	29.82

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.