Gene detail

Detailed information of XP_032225890.2 in Nematostella vectensis

Genomic Location: NC_064041.1:5296073...5316886
NR annotation: XP_001622977.3, NADPH-dependent diflavin oxidoreductase 1 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032369999.2

tGCTGACTCATGGTAGCGCaatccaatatggcggccGCGGCGGGAAAGAAGCGCTTGACCGTTCTCTACGGCTCACAGACCGGCACAGCTCAAGAAGTAGCCGAAAGGATAGGCAGAGAGGGGAGACGACGGCACATCTCTGCTCGCGTGCTTGCGTTGGATGATTATAATGTGATAACTGCAGATCTCTCATATCTGTTCAAAGGCTGACCTTATCAAAGAGGACCtggttgtgtttgtttgtgcGACGACTGGACAAGGCGATGAGCCAGATAATATGAAAAAGTTCTGGCGATTCATTATGAGGAGAAATCTGCCTGCGCATTCCCTGCAGCAGTTATCATTCTCAGTGTTAGGCCTTGGGGACTCCTCGTACCCAAAatttaACTTTATTGCCAAAAAGCTGAACAAACGCTTGCTTCAGCTAAGTGCTAGTGTTCTCCAACCAGTTGGGCTGGCTGATGATCAACATGATCTAGGtcctgatgctgTGGTTGATCCATGGCTAAAGGAATTATGGGAGAAGGTATCTGCAGTATACCCTATTCCACCTGGACTAGAGATAATCAGTGCAGATGAAAGGCCACCTGCAAGATACAAGATTATCTACACTGACTCCCCTGCAGAAGAGAGTTCTTTAGAATttgGTTTACCTGCTAGTCAGCAAGCCCCATTCTTTGCCACTCTTATTTCTAATGACCGAGTGACTGCTTCTAATCATTGGCAAGATGTACGGCTTGTGAAATTGGACATAAGTGGCTCAGGAATCAGTTATTCACCAGGAGATGTTGTTATGGTCCAGCCAAGCAATCTTTCGGACACAGCAGAAGAGTTTATGAGCTTCCTCCATCTCGATCCAGACAAGAATTTTACCCTCCAACAAACAAATCCAGatatCCCTGTTTCAAGAAGGCTTTCCAGACCCTGCAGTATAAGGTTCCTGGTGGAGCATTATCTTGATATTCAGGGAGTGCCCCGGAGGTACTTTTTCGAGTTGCTTTCTCACTTCACATCGTCAGAacttgaaaaagaaaagctgCAAGATTTTGCATCTGCAGAAGGACAGGAAGATCTGTATTCATACTGTTACAGACAGAAGAGGAGTACACTAGAGGTTCTACAGGATTTTCCACAAGCTAGTGCAAACCTTCCATTCGAGTATCTCCTTGACCTAATTCCTGCGATTCAACCAAGAGCCTTTTCCATAGCATCCGCCCAAAAGGCACACCCAGATGAGATTGAGATTTTGATGGCTGTTGTTAAATACCAGACCAAAATTTCAAAGCCTAGACGTGGCCTGTGCTCCACCTGGCTGTCATCTCTACCGAATCGAAGCCGAGTGCCTGTCTGGGTCAAACGCGGCACCATCAGTCTGCCCTTAGACCATACAGTACCGCTACTAATGATAGGACCAGgaacTGGTGTTGCGCCTTTCAGAAGTTTTATCGAAGAGCGACTTTTTCCAGTGCACGAAGGATCGAAATGTGTGCTGTTTTTTGGCTCTCGCAACAAGAACGCAGatttcttttttgaaaatcagtgGAAAGAGCTCAGCGAGACTGGATGTTTGAGTGTCTTTACTGCTTTCTCGCGCGACCAGGATGGTAAGATTTATGTCCAGCATCGAATCCGCGAGCAAAGTTCACTAATTTGGGACCTCATCAACAATCATCGGGCGATATGCTATCTCGCTGGGAATTCCAAGCGCATGCTGATAGATGTGAAAGAAGCCTTGATCGAGGTGTTTTGTAAGGAGGGAGAGATGAGCGAAAGCGAGGCGGAAGCATTATTCGCTGAGCTTGAGAGGACAAGACGCTACCAGGCGGAGACATGGTCGTAGCAAGGCATGTCTACACCCTGGTTGTTTACAATTTAATCGGAAGTTCCGGTACTTCtggttattttgtaaattGTACAGATTTCTCCCACTGGAAAATTCCGGAAAAAGTAGAATTACTTGAGAGGTTGCCCACTTTCAACGGAGATACCAGAAATTCCGAAAAATCGtgtaccattttttttttccatagaATATTTGACCGAGGCCCCCAGCGTCCACTATTCCCCAGACCCCAAAAGTAGAATTTCTGGGTACAGAAGCAAATGGCACATAAGTCACACCGGAAATTTTGATATATAAGAAACTTCTTTTTACCATTCTGGCATTACGGAAGAACTGGGATCTCCTTCCGGAATTTCCGATTAAATGGTAAACAACCAGAGACCCTATTCACACTGCAAACATTACGAGTAGCGCTATCGGACCAACATCCATGGACAAATTACCTGTCAGCCGTCATTTTGGCATCCTAGCAAAGTGCCAAGTGCGACAAAGCTTCGGTAAATTTGGGAAATCTATTGTGATGTTTTCGATCGAAATGTGTAAGACTTTGTTTTAAGATGgtcattttgattttttaataattagTCTTCCAAATTTCGAATGAAGACAATAGCAAAGGTTTGGCTAACAGGGCTCTTTAACTACAGAAGCCAGAAGCATAGGTAAAACTGATCGGTGCAAGGGCGGCGAGGTGGCGAGAGAAAGGAGTCTGGGCCTAGCTGCAGGAGACCAACCCTGCCTTCCTGACTGAATCGCAGCGAGGCCTTTCTTTTGTCGCAAAATCTATACCCAAAGCTACTGCGATGAGAAAATGGATGCAATGTCTAATTGTGTGGGTCAGCGGTAGAATAATGGAGATATGACGATCCCAGCCATCTAGGCACTactttgaaaattacccagaaggcACTGAGAACAAGATTGGCGCCAGTCTGTTAGCATCGGTAACATATAATCTGAATGACTGAACATGGTCAGTGGTAACATGACCAAGCAAATTGCTCAACCTAGAAAAGGAAACATTGAACTCTACATGATCAAAATCAAATACGtgaatttatttttacatttattgGAAAAAGCCTTGATTGAGTGGTTCGATTTTTAGTGTGGTGATATTTCCAGTATTCTGTAAAATTCTATattgaagaaaaaataagCTGGTGCAAGCAATTGTTAGAGAAACGTTTACTGTTATATAAATGTACTGTACTACTTTACCACTGTAAATCACACGGAGCAGTATACAGATAAGGTTGAAGTTCTCCAccaattaaataaataaggaCCTACATGGGTGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRG5	NADPH-dependent diflavin oxidoreductase 1 OS=Xenopus laevis OX=8355 GN=ndor1 PE=2 SV=1
Q9UHB4	NADPH-dependent diflavin oxidoreductase 1 OS=Homo sapiens OX=9606 GN=NDOR1 PE=1 SV=1
Q1JPJ0	NADPH-dependent diflavin oxidoreductase 1 OS=Bos taurus OX=9913 GN=NDOR1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001660 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00667 all species →	FAD_binding_1	FAD binding domain	Domain	Interproscan
PF00258 all species →	Flavodoxin_1	Flavodoxin	Domain	Interproscan
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023173 all species →	Homologous_superfamily	NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR028879 all species →	Family	NADPH-dependent diflavin oxidoreductase 1	Interproscan
IPR001709 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase	Interproscan
IPR008254 all species →	Domain	Flavodoxin/nitric oxide synthase	Interproscan
IPR003097 all species →	Domain	Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR029039 all species →	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19384 all species →	NITRIC OXIDE SYNTHASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003958 all species →	Molecular Function	NADPH-hemoprotein reductase activity	Interproscan
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032225890.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032225890.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

6.5Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	3.34	4.02
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	2.82	3.68
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.72	1.91
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.32	2.82
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.73	2.94
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.17	3.51
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.15	3.69
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	2.24	3.59
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	2.06	3.27
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.62	2.45
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.81	3.23
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	4.75	6.45
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	2.44	3.78
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.48	4.44
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.60	3.99
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.93	2.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.02
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.02
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.97
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.68
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.54
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.25
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.91
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.90
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.37
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.82
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.64
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.51
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.94
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.75
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.48
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.51
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.69
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.77
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.59
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.14
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.27
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.92
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.45
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.41
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.23
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.23
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.97
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.45
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.98
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.82
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.78
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.55
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	4.44
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.99
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.82
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.78
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.