Gene detail

Detailed information of XP_032226001.2 in Nematostella vectensis

Genomic Location: NC_064045.1:10481817...10491440
NR annotation: XP_032226001.2, 4-coumarate--CoA ligase 1 isoform X3 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032370110.2

ATTCGCTCGTACACTATCTCAGGCGATAGAATCCTTCGGTCAAATTACCCCGCTATAGACGTGCCGAAAAACCAGTCATACGTACAGTTTATACTCGACAGTTGTAAGAGGAATGGCGAGAAAGATGCCTTGACGGTCCAACGGGCGAGACATTCACGTATACAGATCTTATAACCCTGACCAAGAAATGCGGGTCTGCTATGCTTCGCGCAGGGGTCACACCCAAAGACGTGGTCTTACTTCACTTGCCCAGCATCATGCAGTACGCTGTGTATCTATATGGGGCACAGGCCATGGGAGGCGTCGTAAGCACGGCAAATCCCGGGTATTCAGCAGATGAGTTAGCCTACCAAGTTACAGACTGCGACGCTAAGTACATTATCACAAACTCGAAGCTCTACCACACTGCTATAGAGGCGGCGAGGAAAGCTAACGTCGAGCACGTCTTCGTGTCGGAGGAATTCTTCAAGGATGTGCTTGAGGATGATGGTTCAGCGTTAACGGGAATCTATTGTCCATCGGACACGACAGAGACAGCATGTTTGCCGTACTCTAGCGGGACTACGGGCTTGTCGAAAGGCGTCATGCAATCACACTACAACCTCATAGCGAATGCGTTATGTCTAGGGAGCAAAAATTTCATGCAGCACGACAAGCAGTTGGTCACCCTGTCTTTAATGCCTCTTTTCCACGCATTCGGACTGGTGATTAACATAGGCATGCATTTCTATTTGGGCTCCAAGGTCGTCTTGTTGCAGGGGTTTGAGCCTGAGCAACTTTTGAAGACAATAGAGAAATATAAGGTGACTGACTTCCCGATGGTCCCTCCACTTGCCCTTTTCCTTGCTAAGCACCCTCTAGTTGACAAGTACGACTTATCATCCCTCGAGAGCATGGTCTCTGCCGCGGCTCCAGTCGGTAAAGGCGTCCTGAGAACCATGGCTGAACGAATCCCCTCCCTCAAAATTGTCAGGCAAGGTTACGGTCTGACCGAGTGCACAGCTGGGGCGATCATCACCCCTGTTGACCCCAGTAAGGCCAAGGACGGGTCTGTTGGGGTGTTGCTTCCAAACCTAGAAGGCAAGATCACTGACTTAAAGACGGGAGAGGCGCTGGGTCCAAACCAGGAAGGGGAGATCTGTATTCGAGGACCTATGGTCACAAGTGGTTATCTAAACAAACCCGAGCAGACGGCGAACACGTTCACGAATGAAGGATGGCTTCACACAGGGGATATTGGCTACTATGACGACGACGAGTATTTCTACATCACAGACCGACTCAAGGAACTTATCAAATACAAAGGACACCAGGTCCCCCCTGCGGAGCTCGAAGCCCTGCTCGTCTCACACCCCCATATCTCTGATGCCGCTGTCATCGGTATCCCGGATGAAGAAGCCGGTGAACTCCCGAAGGCCTTTGTGGTCGCCAAGGCGGAGATCTCGGAAAAAGAGATCTTGGATTTCGTGATGGAGCACGCCGCCCCTGAGAAAAGactgaggggaggggtggagatCGTGGATACCATTCCCAAGACCGCTAGCGGCAAGATTCTTAGAAGAGTGCTTAAGGAACAGGCCCTTGCTAGTTAGGAATTCATGGAATAACACTCAAGCAACATGCGCTGATAGAGCTGATGGCTAGCTCTAAGAATTCTGTAATCAAAAAACGGACGCTTGCTAGCTAAGATTTCCTAAAATCTCACTCAAGCAACATGCAGTCTTAATCTAGGCATTCCTAGAATCGCACTCAAGCAACAGGCAGTCGCAAGCTAGGAATTCCTAGAATCGTACTCAAGCAATAGGCAGTCGTAAGCTAGGAATTTCTAGTATCGCCCTCAAGCAACAGGCAGTCGTAAGCTAGGAATTCCTAGAATCGCACTCAAGCAACAGGTAGTCGTAAGCTAGGAATTCCTAGAATCGCACTCAGGCAACAGGCAGTCGTTAGCTAGGAATTCCTAGAACCGCACCCAAGCAACAGGTAGTCGTAAGCTAGGAATTCCTAGAAACGCACCCAAGCAACAGGCAGTCGTAAGCTAGGAATTCCAAGAATAGCACTCAAGCAACAGGCAGTCGTAAACTAGGAATTCCTAGAATCGCATCCAAGCAACAGGTAGTCGTAAGCTAGGAATTCCTAGGAACGCACCCAAGCAACAGGCAGTCGTAAGCTAGGAATTCCTAGAATGGCACTACAGCAACAGGCGCTGGCTAGCTAAGAATTCTTGgaaaattaattaaataacAGGCGCTGCCCGCTAGGAATCCTAGGGATCGTACTTTTAAGCAAAAAACAGCTGCTAGTTGAATTCTTGTAATTGTCCTCAAGCGCCATGCACTAGTTAGCTAGAAATTCTCATTTATTTTTGGATTGGATGCCGAAATCAAACCCAGCATTTAGACATGTCCGTGTACTTAGATTCTCCTATCGATTCTAAAACTTTTAACATGTTACAAAGCAAATATCTGTATAAAAAGctgattttaaaattgtttaaaagTATCTATCCCCTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9M0X9	4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana OX=3702 GN=4CLL7 PE=1 SV=1
Q54P79	Probable 4-coumarate--CoA ligase 3 OS=Dictyostelium discoideum OX=44689 GN=4cl3 PE=3 SV=2
P41636	4-coumarate--CoA ligase OS=Pinus taeda OX=3352 GN=4CL PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000834 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24096 all species →	LONG-CHAIN-FATTY-ACID--COA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016405 all species →	Molecular Function	CoA-ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01904	4CL; 4-coumarate--CoA ligase	EC:6.2.1.12	Phenylpropanoid biosynthesis	ko00940	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.