Gene detail

Detailed information of XP_032226216.2 in Nematostella vectensis

Genomic Location: NC_064038.1:7460001...7464365
NR annotation: XP_032226216.2, OTU domain-containing protein 7B [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC5502067

ATGGATGAAACCTTGAGCAGATTTGTAGATCGTACGGGGGCTGATCCTGCTCTCGCCAGAGACTTCCTACAAGGAACGAACTGGAACTTTGAAGAAGCATTGAAGGCTTTTCAAGAGCTTTCCCTCGGAGGGTCCTTTCCGAACAAATCCCAGAATACAGTGAAAACAAAAACTAGTAAACCACAGAGAGGTCTGTCTGTTGTGAACTCAGAGATTGTCCGTGAAGCTAGAAACAAAGTTAGCGAGAAGGATGTTACATCAAGCAACGGATCAAACGAGTGTTTTGATGAAATGGCCAAGTTCACTTTTGTGCTTCCAGATTTGACGAGATATCCACAAGATTTTAGTGAGTTTTTACGTAGGGATCTGATCGAGACATCAACGCTTGTTTCCCTTGAGCAATCAGGACATTTAAACTGGTGGGCAGATATGGGTGTCTGTCAACGCCTTGTTCCCTTAGCAACAGTTGGTGATGGCAACTGTCTTCTGCATGCTGCCTCTCTCGGAATGTGGGGATTTCATGATCGTCTTTTGACTTTGCGCAAGGCATTATTTCGCACTTTGGTAGGTGATAAGGCCAGTGGGGCAATCAAGAGACGTTGGCGACTGCAGCAGTGGGTGAGAAACATGGAGGCAGGGGGACTTATCTATACAGAAGAGGAGTGGGCAAGAGAGTGGGAGGAAGTGTTAAGGATTGCATCTACCGTGAGGCGTCACTCGCAGCATGCTTCAGAAGACAGCCTAAATCCTGGCACTTTGTTAGAGGAAGATGGCGAACCTAGAGAAAATGCTGTCAAGGAATCAGGACTGGATAACTTAGACAATGATTGCAAATCAGATCAAAAGGATGTTTTAAACGGCAATGAAGGTTCTCCTCTTTTCAACGACAACAAAGGAAATAAAACTACTGCTCAGAGCTCTGAGGAGAGTGAGGATGAAATAAAAGGTCTAGGAGCTTTCGAGAGTTTAGAAGAAATTCATGTATTTGTATTAGCTCATGTCCTTCGAAGACCTATTGTTGTTATAGCAGAACAGTTTCTTAGAGATTTCAGTGGAGATGCAATTGCGCCAATACCTTTTGGGGGTATATTTCTACCCCTGGAGTGTCCCCCTGAACAATGCTACAAGAACCCTCTAGTGTTAACATTTGAGTCAGCCCACTTCAGTGCTGTGGTTGCTAGTGATGGCAAGCAAAATGGAAGCAAGAAAGAGAAAGTGGTGGTGAGTGGTGTGCCAGTTGTTGGGCCAAACTATGATCTGCTACCTATTCATTTCTCTGTGGACCCTGGAGCAGACTTTGCTTGGGAAGAGCTCAGTGCTAGAGTAAAGGACCAGCATATGGAGCTGAGCATGGAACAAAAGCTTATACTCTTGGGGAAATATTTAGAAATTGCAGAGGTAAAGATACCTGGAACTGGAAAGGACCTTAGCAAGGATGGGAATAGCGGGGAAAAGTGTACAGCCCATGCAGCAGAGAAAATAGATCCAAAGAATAAGGATGCTAAATCCAAGCAAGACTCCAAATTAAAACTTGGTTCCAATAAAGGGGATAAAGGCAAAGGATCAGGCTCTTGGTTAGCAAACAAGTTAGTCAAGGTAGGGAACCTGGCAGGAGCTTTAGGCACAACTGTGCACTCCATGGTCTATGTCGCAAAACTGCAGGCCAACAACAAGCCAGTTTACTATGATAAAATGATCGAGAATTATATCCAGTCTGCAAAACAAAGATTCGAAGAGGAGAAAAAGAAGCAAGTGGAGGCAAAGAAAAGTGGTCCTCATGACAAGACGAGGCCTTGCATTGCTCCAGGTTGCCAAATGTATGGAACTGCAGCTACTAATTACTTATGCTCAGGGTGTTACAAGACGCAAAAGACAATTAGTGTGTCTGGTGATTATGGAAACAGTCAGGGAGCTACTACAAGCGGTGCGAATGCTACTGTTGGAAAGGCAGACTCAAAGTCCTACTTCCCACCACCTTCTTTCTCTTCGTATGTTCCATATGACTACTTTGGCGCAGTTGGGGGAGGGAATGGACAAAGAGGACCTAAGCCAGAAAAAGCCTTGCCACCTCTCAGGGGTTCAGTTCAACCGTCACCCCCACCTTCCTACAAAGAGGCCACTAAAGCACCATCAAGGCTAGTGTCAATGGGACAGGAAGGAAAAGACACATGGAGCTGTTCCCATGGTAGTAGGTGTGCCACAGAGGGATGTGACTTTTATGGTAACCCTTCAAGTAAGGGGTACTGCTCATCTTGTTTCAAGAAAACAACAACTCAGGGACAGAATACAACTAGAAATGGTTAA

Transcript

rna-XM_032370325.2

TCCTCAATTCGCGCTAAATAACAACAACTTGACCGACTCGACTCGTGCATCGAGGACAAAGAGAAACTGAATAACTTTTCCTTCACAAAATCCTCCAAAAATGGATGAAACCTTGAGCAGATTTGTAGATCGTACGGGGGCTGATCCTGCTCTCGCCAGAGACTTCCTACAAGGAACGAACTGGAACTTTGAAGAAGCATTGAAGgcttttcaagagctttcccTCGGAGGGTCCTTTCCGAACAAATCCCAGAATacagtgaaaacaaaaactagtAAACCACAGAGAGGTCTGTCTGTTGTGAACTCAGAGATTGTCCGTGAAGCTAGAAACAAAGTTAGCGAGAAGGATGTTACATCAAGCAACGGATCAAACGAGTGTTTTGATGAAATGGCCAAGTTCACTTTTGTGCTTCCAGATTTGACGAGATATCCACAAGATTTTAGTGAGTTTTTACGTAGGGATCTGATCGAGACATCAACGCTTGTTTCCCTTGAGCAATCAGGACATTTAAACTGGTGGGCAGATATGGGTGTCTGTCAACGCCTTGTTCCCTTAGCAACAGTTGGTGATGGCAACTGTCTTCTGCATGCTGCCTCTCTCGGAATGTGGGGATTTCATGATCGTCTTTTGACTTTGCGCAAGGCATTATTTCGCACTTTGGTAGGTGATAAGGCCAGTGGGGCAATCAAGAGACGTTGGCGACTGCAGCAGTGGGTGAGAAACATGGAGGCAGGGGGACTTATCTATACAGAAGAGGAGTGGGCAAGAGAGTGGGAGGAAGTGTTAAGGATTGCATCTACCGTGAGGCGTCACTCGCAGCATGCTTCAGAAGACAGCCTAAATCCTGGCACTTTGTTAGAGGAAGATGGCGAACCTAGAGAAAATGCTGTCAAGGAATCAGGACTGGATAACTTAGACAATGATTGCAAATCAGATCAAAAGGATGTTTTAAACGGCAATGAAGGTTCTCCTCTTTTCAACGACAACAAAGGAAATAAAACTACTGCTCAGAGCTCTGAGGAGAGTGAGGATGAAATAAAAGGTCTAGGAGCTTTCGAGAGTTTAGAAGAAATTCATGTATTTGTATTAGCTCATGTCCTTCGAAGACCTATTGTTGTTATAGCAGAACAGTTTCTTAGAGATTTCAGTGGAGATGCAATTGCGCCAATACCTTTTGGGGGTATATTTCTACCCCTGGAGTGTCCCCCTGAACAATGCTACAAGAACCCTCTAGTGTTAACATTTGAGTCAGCCCACTTCAGTGCTGTGGTTGCTAGTGATGGCAAGCAAAATGGAAGCAAGAAAGAGAAAGTGGTGGTGAGTGGTGTGCCAGTTGTTGGGCCAAACTATGATCTGCTACCTATTCATTTCTCTGTGGACCCTGGAGCAGACTTTGCTTGGGAAGAGCTCAGTGCTAGAGTAAAGGACCAGCATATGGAGCTGAGCATGGAACAAAAGCTTATACTCTTGGGGAAATATTTAGAAATTGCAGAGGTAAAGATACCTGGAACTGGAAAGGACCTTAGCAAGGATGGGAATAGCGGGGAAAAGTGTACAGCCCATGCAGCAGAGAAAATAGATCCAAAGAATAAGGATGCTAAATCCAAGCAAGACTCCAAATTAAAACTTGGTTCCAATAAAGGGGATAAAGGCAAAGGATCAGGCTCTTGGTTAGCAAACAAGTTAGTCAAGGTAGGGAACCTGGCAGGAGCTTTAGGCACAACTGTGCACTCCATGGTCTATGTCGCAAAACTGCAGGCCAACAACAAGCCAGTTTACTATGATAAAATGATCGAGAATTATATCCAGTCTGCAAAACAAAGATTCGAAGAGGAGAAAAAGAAGCAAGTGGAGGCAAAGAAAAGTGGTCCTCATGACAAGACGAGGCCTTGCATTGCTCCAGGTTGCCAAATGTATGGAACTGCAGCTACTAATTACTTATGCTCAGGGTGTTACAAGACGCAAAAGACAATTAGTGTGTCTGGTGATTATGGAAACAGTCAGGGAGCTACTACAAGCGGTGCGAATGCTACTGTTGGAAAGGCAGACTCAAAGTCCTACTTCCCACCACCTTCTTTCTCTTCGTATGTTCCATATGACTACTTTGGCGCAGTTGGGGGAGGGAATGGACAAAGAGGACCTAAGCCAGAAAAAGCCTTGCCACCTCTCAGGGGTTCAGTTCAACCGTCACCCCCACCTTCCTACAAAGAGGCCACTAAAGCACCATCAAGGCTAGTGTCAATGGGACAGGAAGGAAAAGACACATGGAGCTGTTCCCATGGTAGTAGGTGTGCCACAGAGGGATGTGACTTTTATGGTAACCCTTCAAGTAAGGGGTACTGCTCATCTTGTTTCAAGAAAACAACAACTCAGGGACAGAATACAACTAGAAATGGTTAACTAAACAATCAGAAGGAAAACTATTTCCATTTCTCTAAAGAAAAAGCCAGCTCATGCTAATCAACAGGGGAGATGGTTTAAGCCCTGCATTACCCAGGTGCATGTCCAAAGGGGGTTCCAAGGGATCCGGACGTCACCCTGCTTATGTACCATGATAGGAAATTATATGGGTAACACCTGAATTCGACTCTGTCTGCGTAAAAGACCCAGTACAAACAGCATTAGCATTGCTGGACCAGCAATCTGGGCCAGTAATCAGGGCAGTTTAATTGTACTTAAAAAAactaggggggggagggggccgTCACATGCCTTCTGGTAATTTCATTAtactttaagaaaaaaaaaactgggaGGTTCCAAATCAACCCACCCCCCTGGTATCTTGTAATTTGTAATGCTGGCTCTGAATGGGGTATCATTTTACTTCATTAATTGGTGACGGTACCACTACAAGCTTCTATTGAcaactttttgtaaaaaagatAACATTgcacttttatttttttcagtgaTATAATAATCCTCTTATTGAAAATtacaaaat

Protein

Uniprot

Gene family

Uniprot term	Description
Q6GQQ9	OTU domain-containing protein 7B OS=Homo sapiens OX=9606 GN=OTUD7B PE=1 SV=1
B2RUR8	OTU domain-containing protein 7B OS=Mus musculus OX=10090 GN=Otud7b PE=1 SV=1
Q8TE49	OTU domain-containing protein 7A OS=Homo sapiens OX=9606 GN=OTUD7A PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU
Ubiquitin Family	UBD\|ZnF\|ZnF_A20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14555	UBA_4	UBA-like domain	Domain	Interproscan
PF01754	zf-A20	A20-like zinc finger	Family	Interproscan
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005637	Domain	TAP C-terminal (TAP-C) domain	Interproscan
IPR002653	Domain	Zinc finger, A20-type	Interproscan
IPR003323	Domain	OTU domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR051346	Family	OTU Domain-Containing Deubiquitinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13367	UBIQUITIN THIOESTERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0051028	Biological Process	mRNA transport	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0035871	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0070536	Biological Process	protein K63-linked deubiquitination	Interproscan
GO:0071108	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:0071947	Biological Process	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11860	OTUD7A_B; OTU domain-containing protein 7	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala