Genomic Location: NC_064036.1:20603522...20611796
NR annotation: XP_032226428.2, uncharacterized protein LOC116609777 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC116609777 |
| Transcript |
| rna-XM_032370537.2 |
| Protein |
| XP_032226428.2 |
| UniProt accession | Description |
|---|---|
| P25054 | Adenomatous polyposis coli protein OS=Homo sapiens OX=9606 GN=APC PE=1 SV=2 |
| Q61315 | Adenomatous polyposis coli protein OS=Mus musculus OX=10090 GN=Apc PE=1 SV=1 |
| P70478 | Adenomatous polyposis coli protein OS=Rattus norvegicus OX=10116 GN=Apc PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005919 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18797 all species → | APC_rep | Adenomatous polyposis coli (APC) repeat | Repeat | Interproscan |
| PF00514 all species → | Arm | Armadillo/beta-catenin-like repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR000225 all species → | Repeat | Armadillo | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR041257 all species → | Repeat | Adenomatous polyposis coli (APC) repeat | Interproscan |
| IPR026818 all species → | Family | Adenomatous polyposis coli (APC) family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12607 all species → | ADENOMATOUS POLYPOSIS COLI PROTEIN FAMILY | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0001708 all species → | Biological Process | cell fate specification | Interproscan |
| GO:0005881 all species → | Cellular Component | cytoplasmic microtubule | Interproscan |
| GO:0007026 all species → | Biological Process | negative regulation of microtubule depolymerization | Interproscan |
| GO:0007389 all species → | Biological Process | pattern specification process | Interproscan |
| GO:0007399 all species → | Biological Process | nervous system development | Interproscan |
| GO:0008013 all species → | Molecular Function | beta-catenin binding | Interproscan |
| GO:0008017 all species → | Molecular Function | microtubule binding | Interproscan |
| GO:0016342 all species → | Cellular Component | catenin complex | Interproscan |
| GO:0016477 all species → | Biological Process | cell migration | Interproscan |
| GO:0030178 all species → | Biological Process | negative regulation of Wnt signaling pathway | Interproscan |
| GO:0030877 all species → | Cellular Component | beta-catenin destruction complex | Interproscan |
| GO:0045295 all species → | Molecular Function | gamma-catenin binding | Interproscan |
| GO:0045595 all species → | Biological Process | regulation of cell differentiation | Interproscan |
| GO:0045732 all species → | Biological Process | positive regulation of protein catabolic process | Interproscan |
| GO:0090090 all species → | Biological Process | negative regulation of canonical Wnt signaling pathway | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02085 | APC; adenomatosis polyposis coli protein | - | Cytoskeleton proteins | ko04812 | deepkoala |
Transcript abundance of XP_032226428.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
