Gene detail

Detailed information of XP_032226527.2 in Nematostella vectensis

Genomic Location: NC_064036.1:20451442...20485508
NR annotation: XP_032226527.2, MYCBP-associated protein [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5502379

ATGAGTAATAAACTGTCAAGCAAGCCATCGAAAAGAGACCGTCCAAAATCAACAGATAAGTCCAAGGGTAAAAAGCAGATCGCTGGGACTCCAGAGAAAGCAGGAAGCCCAGTGGCATCGGCCATTGCCGTGCAAGACGAGGCGCTTTCGGGATCATTGAATGGCAAAGTAATCAGTGGAGACGATGTAGAATCTCTAGCTATCAACTTGGATGAATTGAAGAAGACTCGTCCCCCGAAGAAACCTGAGGTAGCCAAGCCTTCCACCAAGGTAGTAGTGCGAAAAGCTCGGATAAAGACAGATACAGGGCAGTCCGCAGGAAAAAGTATAACTGTAGCAAAGCCAGCTCCTCTGGATTTTCCCTTGGTGTCCACCCCCCTGACAGGTTCAGCTGGCCCAGTGTTTGATGCTGATGGACAGGTCCTAACTCACAGCATTCTGGGAACATGGGAGGACTTTTACCAGGAGGCTATGGCTAGAGGGGACATTGAGAATCTTCCACCATTTTCTGGGTCATTTGTGCATGCCAAGGAAGTACGACCATTCTCAGATTCTCCCAAGAAAACCAAACGATCCCATCCAAACCATGTGTGGCAAACAAGGATTAATGAAAGCAATGCCCTGAACAACTGGCAGCAGCAAATGTTGCAGAGAAAACGGCAGCAGAACCACCTCTCAGCACTGTTGCAGACCTCTACAGATATGTTGGTGATGAATCAGAGTGAAGATTACAGAAAAAATCAGGAACAGAGGCATGTGATAGACAGAGCTATCCCATCTGTGGATTATGGCAAAGGGTACCAAGTAGGGAGTGAATTCTGGAAGCAAGTGGAGCAGATTGGAAATGATGAGACAGGCATCACGATGACACTTACCCAGACTGAGCGTGGTTACCCACCTCCAATAGAACACATCAGCAAGCCAATCACCATCAAGAATGAAATGGGTATAGAGTGGTCTTCAACACATCGTAAGGCGGCCGTCCACTACCCCTGGCAAGCATCTGGTTTCCTGCAGGAGAGAAAAGAGCAACTTAACAGCGTGATGAATGAGATTGATCCTCACCAGCCGTACATGGATGAGCTTGAGGTGGTCGGTGGGAGAGAGCTTCCACACCAATCCAAGCATGCCATGTCGACGGTGCCAGAAGAGGAGGAGCCGATGGCCGAACAATCACCCCATCTCAGAGACCCATTGGCTAGCTACGCTGATGTCATTCCGCAGCCCATATTTGGTCCCTCGCTAACCATCGACGGCCAAACCGCGCAATGGACTGGTTCCAGCACTAATGGCCTTGGGCGAGTGGGCGTGGCTAGCCGTGTGACATTCGAGGCGAACACGGGAGAACGAGTGGTTTCTCTACTGCATATCTGTAATGACGGCACAACTGCCATTTATTTCTCCTGGAAGAGGGTCCCAAAAGCCAACACTTTGGGCACCAAGCTAGCTGGGCGAACACAGCGCTTCTACTTTGACACCAACAGCAGAGTGATACTTCCGGGAGAGACCCTGAAGTTCCCATTCATCTTCAAATCTCTAAATGCTGGAATTTTCTCCGAGAACTGGGAGCTATTGACCGAGCCTGTTCTGTGTGGTGGGGGAGCCATCAGGGTCTGTCTAAGAGGTATTGCCATTGAGGAGGATGTGTACGCAGATGCTCGTCGCGAGATAGAGAAAGAGCTAGCTCATCGGGAGGCCATAGAAGCAGCCGCTCGTATCTTACAGGAGATCTTGGATGGTGTGCGAACTCCTGAGAGATCCCGCTCACCCGTGGATGCCTACATTACGGAGGAGGAAATATTTTCCAGACAGAACAAAGGGATGCATTTCCAGGACGAAGCTGTGCAGAGTCTGAAGGAGATCTTTGTAGAGGTGGAGCCTGGGGCAGAATGGGACCTCTCGGTGGGGGGGCTACAACAGCGCATTATGGTAGTCGAAGATGATGACACTCGTGACAGCTTACTTCAGCGGCTAAACCAGGCCATCGTGTCGCTCTCCTTCCCGCCCCCCACCCCTATGAAGCAGGCCATGTATACTGCCACGCTTCAGGTGTTGTGCGAGATGGTGGATAACATCGTGGGACAAGCGGTAATGATCAGATCTATCCTGGGTCTACCTCAGAGAGATCTGGTGGAGGACATTTCACAAGAAGAAGTCGAAAAGCGTACCCGTAAGCCAACTATTCAGGAACCCAAACCGGACAGTAAGAAGTCGGACAGAAAGGACAAGAAGGGCAAAGACAAAGGCGCTGATCACGAGCGTCCCACGTCAACACAAAGAAGTAAACTTTCTGCCAAGAAATCCGGACGAGGAACTGCCACACCCTCTTCCCAGCCCAAGTCTGCACTGAGCGAGGCAGCTGACCGCGCACTGACTCCAGCTAGTGGCGACGGGCTGCCTGTGGAAAAGGTCGATCCGGTGATCGAGGCTAAGTACCGCGAGAAGCTCTTTATACAGGCATATGGCACAATTGTGGAAACATTCACGAAACTCGACATGGTCCTGGGGGACATTAGGGCACTGGAGACGTCTGAGGCATCGGAATGA

Transcript

rna-XM_032370636.2

TGTGTCCACAAAACGAAGGCAGCGTTTTGATTATATATAAccatgagccaatcagaagaCCCCTTATATTTGAACTGTCTTCTATTGAGCAATCATACAGGCTATTAGAAACGAGAAAGTACATTTTTGGCTCCATGTCTCGAATTTTCAGGCTTCCCGCGGTTGGGAAAAAGGGGTGGTCGCTTAGGAATGTACTCGTTTGTtgacaagatggcggcttgtTGCTACGAGAAGTGAACATTGAATGTTGtagcaaaaaaaatagaggAGTTTAATCTAGTTCTTTTGCATAAGACGCTGTAACTTTGAAAAATGAGTAATAAACTGTCAAGCAAGCCATCGAAAAGAGACCGTCCAAAATCAACAGATAAGTCCAAGGGTAAAAAGCAGATCGCTGGGACTCCAGAGAAAGCAGGAAGCCCAGTGGCATCGGCCATTGCCGTGCAAGACGAGGCGCTTTCGGGATCATTGAATGGCAAAGTAATCAGTGGAGACGATGTAGAATCTCTAGCTATCAACTTGGATGAATTGAAGAAGACTCGTCCCCCGAAGAAACCTGAGGTAGCCAAGCCTTCCACCAAGGTAGTAGTGCGAAAAGCTCGGATAAAGACAGATACAGGGCAGTCCGCAGGAAAAAGTATAACTGTAGCAAAGCCAGCTCCTCTGGATTTTCCCTTGGTGTCCACCCCCCTGACAGGTTCAGCTGGCCCAGTGTTTGATGCTGATGGACAGGTCCTAACTCACAGCATTCTGGGAACATGGGAGGACTTTTACCAGGAGGCTATGGCTAGAGGGGACATTGAGAATCTTCCACCATTTTCTGGGTCATTTGTGCATGCCAAGGAAGTACGACCATTCTCAGATTCTCCCAAGAAAACCAAACGATCCCATCCAAACCATGTGTGGCAAACAAGGATTAATGAAAGCAATGCCCTGAACAACTGGCAGCAGCAAATGTTGCAGAGAAAACGGCAGCAGAACCACCTCTCAGCACTGTTGCAGACCTCTACAGATATGTTGGTGATGAATCAGAGTGAAGATTACAGAAAAAATCAGGAACAGAGGCATGTGATAGACAGAGCTATCCCATCTGTGGATTATGGCAAAGGGTACCAAGTAGGGAGTGAATTCTGGAAGCAAGTGGAGCAGATTGGAAATGATGAGACAGGCATCACGATGACACTTACCCAGACTGAGCGTGGTTACCCACCTCCAATAGAACACATCAGCAAGCCAATCACCATCAAGAATGAAATGGGTATAGAGTGGTCTTCAACACATCGTAAGGCGGCCGTCCACTACCCCTGGCAAGCATCTGGTTTCCTGCAGGAGAGAAAAGAGCAACTTAACAGCGTGATGAATGAGATTGATCCTCACCAGCCGTACATGGATGAGCTTGAGGTGGTCGGTGGGAGAGAGCTTCCACACCAATCCAAGCATGCCATGTCGACGGTGCCAGAAGAGGAGGAGCCGATGGCCGAACAATCACCCCATCTCAGAGACCCATTGGCTAGCTACGCTGATGTCATTCCGCAGCCCATATTTGGTCCCTCGCTAACCATCGACGGCCAAACCGCGCAATGGACTGGTTCCAGCACTAATGGCCTTGGGCGAGTGGGCGTGGCTAGCCGTGTGACATTCGAGGCGAACACGGGAGAACGAGTGGTTTCTCTACTGCATATCTGTAATGACGGCACAACTGCCATTTATTTCTCCTGGAAGAGGGTCCCAAAAGCCAACACTTTGGGCACCAAGCTAGCTGGGCGAACACAGCGCTTCTACTTTGACACCAACAGCAGAGTGATACTTCCGGGAGAGACCCTGAAGTTCCCATTCATCTTCAAATCTCTAAATGCTGGAATTTTCTCCGAGAACTGGGAGCTATTGACCGAGCCTGTTCTGTGTGGTGGGGGAGCCATCAGGGTCTGTCTAAGAGGTATTGCCATTGAGGAGGATGTGTACGCAGATGCTCGTCGCGAGATAGAGAAAGAGCTAGCTCATCGGGAGGCCATAGAAGCAGCCGCTCGTATCTTACAGGAGATCTTGGATGGTGTGCGAACTCCTGAGAGATCCCGCTCACCCGTGGATGCCTACATTACGGAGGAGGAAATATTTTCCAGACAGAACAAAGGGATGCATTTCCAGGACGAAGCTGTGCAGAGTCTGAAGGAGATCTTTGTAGAGGTGGAGCCTGGGGCAGAATGGGACCTCTCGGTGGGGGGGCTACAACAGCGCATTATGGTAGTCGAAGATGATGACACTCGTGACAGCTTACTTCAGCGGCTAAACCAGGCCATCGTGTCGCTCTCCTTCCCGCCCCCCACCCCTATGAAGCAGGCCATGTATACTGCCACGCTTCAGGTGTTGTGCGAGATGGTGGATAACATCGTGGGACAAGCGGTAATGATCAGATCTATCCTGGGTCTACCTCAGAGAGATCTGGTGGAGGACATTTCACAAGAAGAAGTCGAAAAGCGTACCCGTAAGCCAACTATTCAGGAACCCAAACCGGACAGTAAGAAGTCGGACAGAAAGGACAAGAAGGGCAAAGACAAAGGCGCTGATCACGAGCGTCCCACGTCAACACAAAGAAGTAAACTTTCTGCCAAGAAATCCGGACGAGGAACTGCCACACCCTCTTCCCAGCCCAAGTCTGCACTGAGCGAGGCAGCTGACCGCGCACTGACTCCAGCTAGTGGCGACGGGCTGCCTGTGGAAAAGGTCGATCCGGTGATCGAGGCTAAGTACCGCGAGAAGCTCTTTATACAGGCATATGGCACAATTGTGGAAACATTCACGAAACTCGACATGGTCCTGGGGGACATTAGGGCACTGGAGACGTCTGAGGCATCGGAATGATGACCCACATGTTTCTAATGGGATCCATAGTTGTACTTCTATGAACCCTATGATTAAACGACCTTTTTTGAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SUV2	MYCBP-associated protein OS=Mus musculus OX=10090 GN=Mycbpap PE=1 SV=1
Q69CM7	MYCBP-associated protein OS=Rattus norvegicus OX=10116 GN=Mycbpap PE=1 SV=1
Q8TBZ2	MYCBP-associated protein OS=Homo sapiens OX=9606 GN=MYCBPAP PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003529 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14646 all species →	MYCBPAP	MYCBP-associated protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032707 all species →	Family	MYCBP-associated protein	Interproscan
IPR052822 all species →	Family	MYCBP-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48333 all species →	MYCBP-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_032226527.2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25648	MYCBPAP, AMAP1; MYCBP-associated protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032226527.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

43TPM > 0

16Conditions

24.8Max TPM

17.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	18.15	19.52
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	17.30	21.20
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	20.12	21.55
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	18.28	21.78
whole 6 week old aboral regenerate · regenerate uncut	3	3	20.97	24.06
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	12.95	23.01
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	21.08	22.99
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	16.17	17.32
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	19.88	21.65
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	19.74	23.22
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	21.67	22.70
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	11.27	17.02
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	16.49	19.36
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	11.19	17.01
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	23.31	24.76
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	7.13	21.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	19.52
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	18.47
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	16.46
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	21.20
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	16.38
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.32
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	21.55
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	20.44
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	18.38
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	21.78
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	17.53
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	15.55
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	24.06
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	20.19
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	18.67
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	23.01
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	15.85
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	22.99
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	21.66
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	18.60
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	17.32
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	16.41
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	14.77
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	21.65
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	19.44
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	18.55
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	23.22
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	20.69
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	15.31
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	22.70
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	21.61
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	20.70
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	17.02
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	16.78
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	19.36
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	16.16
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	13.95
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	17.01
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	16.56
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	24.76
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	23.90
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	21.26
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	21.39
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.