Gene detail

Detailed information of XP_032226797.2 in Nematostella vectensis

Genomic Location: NC_064038.1:1289060...1302877
NR annotation: XP_032226797.2, fibropellin-1 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032370906.2

CACACCCTAAATACAAGAGGGCTCTCGGACTGAGGTACAGTTCCCTAAAATTGGTCAGTTAAGGGTGCGAAGATGAAGTGTGTTACAGAAGCAGCTGTATTGTCACTTGTTCTCGCTACATTTGTAGGATCAGTGCAAGGAACAGGTTTCTGTGCGTCCAACCCCTGCACCATAGGCACGTGCATGGAATCACCGAGCGGCTACTACTGCACCTGTCAACCGGGGTACTCCGGGGCAGGCTGTAGAACACAGATCGACTACTGCAAGCCAAACCCTTGCTATAACAGCGCTACATGTAAAGGATTCCATATCGAAGGGTGCGGAGGCTACTCATGCGTATGTCCCCCAAACTTCACGGGAAAACTGTGCGAAAAGGAAATATCACCCTGCAGCCCTGACGTCAACCCTTGTGTGAATGGGATATGCAAGTCGGTGGGCGGGGAGATTCGGTGCACCTGCCCAGGAGGATGGACCGGGCAAAGATGTGAGACCAAAACAAGGTGCTTTCTCGGTCTGTGCATGAACGGCGGCACATGCGCAGAAGGCATGGCAGATCACGTGTGGTACTGCCTTTGTTCCGCTAATTACACAGGCGATCAATGTGAAACAGCTGTTAACGATTGCTCGAGTAATCCCTGCTTGAATGGAGGAAAATGCTGTAACGAGAACGACGCGCGTGGATACTCGTGTCAGTGTCTGGCGGGGTTTTCCGGAAGAAGATGTGAAAATGATTTGAACCCTTGTATCCCGTGCCTTAATGGCGGACAATGTGTGGAGTTTAATGGCGTGTTCAAGTGCGTCTGTGCGGCAGGTTGGTTTGGAGTTCATTGCGATCAGAGAATAGTCACCACCAGCACCTCGTATTCATCATCAAGGCTGACATCCACGTCCCACGtgaccaccacaacaaccccAAACCTTTGCTCGTACTCTCCTTGCCAGAATGGAGGCACATGTGAAGCTCACGGCGACTCGTACCATTGTATCTGCCCTATGGGCTGGTATGGAACATATTGTACCTTTGGCTTGTGCGAGTTCATGCCCGACTTGTGTAAGAATGGGGGGGCATGCAGGCTGCGTGCGCCTGATTGGGCGTACTGCGAGTGCCTCATGGGATACACTGGAGACCATTGTGAAGTTGCTCTTAGTAGACCCTGTACCACCACACGTACCACAACAACATCTGTGTCAACACCGACTTCCTCCACGCCTACCACACAGCATCAGGTCACAACAACATCCGTGTCAACACCGACTTCCTCCACGCCTACCACACAGCATCAGGTCACAACAACATCTGTGTCATCACCGACTTCCTCCACGTCTACCACACAGCATCAGGTCACAACAACATCCGTGTCAACACCCAGTACTACAACACCTCCTCGTACTACATCCATCTCAACTACAAAGACTACGAGAGTGACTACTTCTACACCATCGGCAGTTACAACAGCGGTGACAACGGTAGTTAGAGATCGCGTTGTTCGAGTCTACGTTATCCGGCGTGAGCTGATCTGGCTATGGTTTACTTGCGGCATTCTCGCCCACTCTGGTCTCATCCTACAGACGGAATCCGGGAAGGAATATGTGTTGGAATATATGGATGATGGGAAGGCCCTTCTCTATCCAGCAAATTACAAGATTAAAAAGGGAGATCATCCAGATGGTGCGACTTTTATCGAAATGCCCGACAAAGACGGAAAAGACCACGATTGGACAAAGCAGAACAAAGGAACTGCAATGCCAGCTGACATCGACGTcactccacaggaagcccagaGTCAGATGCAGAAGATCGTGGGCGACAATTACAACTTCCTGTGGAACAACTGCCATGCTGCACAAGAGGCTTTGAGGCTTGCCTGGGGTTTGAAGGTCGACAGAAAGCGACGGAGATCGGTGCGTTCTAAGGGGATTGATTTGAGGGAAAGGCGCAAACAGCCGCTATGGATGAGAAGGCACCAGATTGCTAGGAGTCTCTAAACGTCAAGACAAAATAGAATGATTCCACTCCATGGAGCATTGAAACTTTAATGGGCATAGGTGAAAAAGGATCCTTTACAGTGAACGCTTTAAACACAGCTATAAGCTCCATGTATAAGGATAGATCACAAAAGAACAAGGAGGAATAATACGTAGATAATGCCTGATTTTATTCTAATAATAAGTATGTAATGCTATTCTTGGAAGCAATCATATAAAGGAATATAGAATGTAGAGAATTTAAATAAATGGGAAGTTAATATCATATTTCAAATC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011714 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF07974 all species →	EGF_2	EGF-like domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR051355 all species →	Family	Notch and Slit guidance protein	Interproscan
IPR013111 all species →	Domain	EGF-like domain, extracellular	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45836 all species →	SLIT HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032226797.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032226797.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

33TPM > 0

16Conditions

2.7Max TPM

1.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.20	0.61
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	0.73	0.85
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.07	2.57
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.89	2.34
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.15	1.37
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.90	2.71
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	0.46	0.92
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	0.85	1.34
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	0.92	1.57
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.34	2.18
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.01	2.70
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	0.71	1.15
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	0.64	1.07
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.40	1.21
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.05	1.72
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.73	2.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.61
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.85
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.79
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.55
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.57
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.14
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.50
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.34
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.72
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.63
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.37
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.09
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.00
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.71
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.92
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.45
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.34
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.21
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.57
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.19
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.18
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.85
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.70
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.12
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.21
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	1.15
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.97
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.07
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.86
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	1.21
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.72
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.42
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.19
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.