Gene detail

Detailed information of XP_032226923.1 in Nematostella vectensis

Genomic Location: NC_064042.1:16053542...16059385
NR annotation: XP_032226923.1, aristaless-related homeobox protein [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032371032.2

AAAAATGTCAAATTCTTGTTTATTTTCGATCGATCGTCTTTGGCTAGATTTTGAAAGCTCACAGCTCGTTGAGGTCAAAGAGCTGCCAGGCGTGAAGCGGGCTGATACtcgaaaattatttttttaacgcCGACTCTCACTACTTCGCACCCTCGCCCCAGTGCACCTTGACCTTTGGCGTATCACAGgattcccaatattcgaaaacaaaacatttcagaCCAACTTTATTAAGCGATCCACGCCAATAATTATTTGGCTTATAAGCCTTCTCACCCCATAGCATAGAGATCTctagcgttttttttttattagccaATAGTATGGCGGCTTTTATTACAGCCACCTAAAACGGTGATCTACAGCCAATGGTGTGGCGACTTCTGTTATACCCCCTCTCCCAACCAATGAGATTCAGCTTATAAAGGTTCATAATTCCCTCTCAAGCCAATGAGATGCCACCTTCCtaataaagatattttgaCAATAGTTAGTCGGCTTCTTGAAAGATTGTTTTACAAAAGAGGACAAAAGGTTGATTTCCGAAACATGTTGTTTATGGGAATACCTATCTCATTGAGTTCTTTGCCATGGATACTTAATTTCACCGGTAGCAACACCTGATTTAGTGTGTGAGATAAAACCGCAAttgtaattttgttttgtctgaTCTGCTTGCCCGGGGGACGGAATAaacagttatttttttaaattggtaTCGAGTCAAATATATTTCACCTGTTTCTGCTAAAAACAATATTCTATAAGTtactttgaaaagaaaaacgaAGATCGATATATTTAATTGAATTTCATTTGCTTATGGCTTCAAACCAAATTACCAAAAACTTTGAAAATACGAGGCTGCAATCAcgcaaatgtttttttattaaggtTGTTGTTAGTTTAAAAACCCGTTTAGTACAAGTGGCGAAATGTCGCTGGGCAGTGAACAAATAATTGCTTTAATGTTTAATAATTTCTTAATTTGCCTTTcaataacaaacaaagaacCTTTGAGCCCTCAAATGGCTATTTCCTTTTAGATATATTTACGATTTATAACAATTCTGCAGTCAAATAAAGCATTTTTCTTATGAGTTAAAGGTTGGAAAAAAAGTCAGCGGTGTCTATGGCCAACCCTCCAAAGTGTTTTACAATCCGCCATGATGGATACCTAATTGAATCAAGTAGGAGGTATTTATCAAAAAGTTATTTCAACTATTTATTACACCTTGAAGTTTTCTTCATACCTTGTTAATTGGAAAACAATCCAACATCAGCACatgaaaatcaaaatattttgcaTACGGGATCTGGGTTGGTTTTGATGATAATATAATTGTTGTCCTGTTTATATATGGTCTTGGGCCGATTGGATCTCTCTGTATGCCTACagctttcttataaaaaaaaaacgacaaatTAAATTAGGAACACTTAAATAGTTAAAAACAAGTCTCgtaaaagaaaagagaaaacatcGGGGAAAGTTCGCAATGACAATTTTTGTGAATCCATAGCTATGCGTTCATTCATGGTGGTATAACCGGTCTCAAACAAGCATCCAACCATGAACGGGTGGCCTTGCTTGCTTTTGTGAAATTTTACGGCCAATGGCTTTTATCTTTCCGACCTAAATCCTCCTATTGTCCATCCTTGATGATTATCTCGTAGAATCATTACTAACGTTTTCACGAAATAATCGAAAGTCCCCCATGTAGAGAGGTTTTGCGATGGCAACTTGAAGTGCAACAATAGCTTTTTCGATGTTATGGCTTATGCCTGATGGTTCAGATTGTTCTGTTCTCACCTTAAAAACATAATTCGCGCTTGCcaattgtctttttatttgtttgtcaaCAGTGTTTACACGGTTTGAAGCATCTTTTTAGTCGCATTGAACCATTAGACACAGCCAAAACCGGACCTAAAAACCGTGACTAAAACGCAAAACAAATTACTTCAAAACTCCAAAATAACAATTTCCCAAATGAGATTCCTGTTGACAGATACGTGAAAACCTGTCAGAGGTCTCTGGTTTTTTAGTGATGTCATTGTCTTATTAGTTTAATTAAACTAGAATGATATCATAATTTAAGAGGCGTTTTAGTTTGGTGGGCAAGGAACTGAACCGAAGCAAAACTTGTGAATTATGTCAACAGTGGACTGGCGGTGCTGATTCGCCAACACTCGCACAAACCAGTCGTCCGTTTAAGACACTCTTGAAAATAGCCATCTGATTGGATGGATTCCCTCAAATGTATCGACTAGTGAtaaacgaatttaatttattaattaaagCGAAAAACGGCAATTAACCAGGTAAATCCCTTTAGGAACAGGGCATGTTTTCAATCTTTCGCCTACACGGGTCATTGTACTCCGTCAGCTGTCCGCCCGGGCTGGAATCGCCCTCTACAACTGCGGTCTAATTAGCACTCAAAAATTATCATTTGGGCATTTAAAAGCAGATCTTTGCAATCTCCGATTTTCATTCTAAGCTCCAAGAAGTAAAACAGGCGGGGACAAGTGGGATTAAGGGCGGAACACGAGAGAAGGTGGCAAGATACTTGACCCTTGAAAAGGCTTCGTATGGTCCCTTCACAAAGCAAGGTCGATACAAACACTTGGCCTGGAAGTCAACACTTGGCCTGATTATTCGCATCGAAATCAGACGCTAAGAGCTTGCAAACTAGACATGAGTGCTCTCAAAGCAAGAACGCGTTTCATGGGCTCGTACACAATCGACGGTTTACTAGGACTAAAACCCGAACCCTCAACAAACCATTCAAGCGAACAAGACCTCCTTGACAGCCAAACCAGCCCGTGCAGCGAACCTACTCCAGGTGCTAACGAGTTCCTGTCAACCCAAAGAAACCAAACTTCGCCTGTGCAGCTAACACGGAATTCTGACGATGAGAAAAGTGATGAAGAGGCTGTTGATTCGAACAACGAGCTCGAAGGAAAGGATTCTACGGCCAAACGCAAACAACGACGGTACAGAACGACTTTCACAAGCTACCAGTTGGAAGAGTTGGAAAGAGCCTTTGCAAAGACCCACTATCCGGATGTGTTCACTCGCGAAGCCCTCGCGGTAAAAATCGACCTCACAGAAGCGAGAGTTCAGGTGTGGTTTCAAAATCGACGAGCGAAATGGCGGAAGAGGGAAAAGGCTCAGGGCGTGCGAATTCACGCTCCACTCGGGATCAACAACCCGCtggtcccccctccccttacgTCGTACTCTCCTGATGCACTAAGCAAGGGCTTGGACATGGGCTGGGGCGCGTTATCCCGTGCTGGCGTGCAAGAGATGCCAGCTTTCCCTACGTTAAGACTCCCGCTTCACCCCTTCGCATCCACAGGATTTGGGACACCTGCATTTTACAACCCAAGCTCTTATCATCGTGAATACTATCCTGTGCTGGGACCGGCGATTCTCTCCTCGCCACACTCTACGTATACACCACAAAAATTCAAGTTCTCCCCTGCTTCAAGCTCGAGCGAGTCGCCCCCACCCGGGGAGATGGAGGGTGATCGTAGAACTTCGAGTATAGCGGCACTTAGACTTCGCGCCAAGGAACACTCAGCTTCTATAATAACGCCAATGGCGTTTTCgaaataaaacaagaaaatcaagcaccTTCACCAGACCAAGAATACGCTAGTAAAGACTCTAGAGAAACGCATTTATTATTCATCAAAGCAACCAGCAACATTGTACAAGGTGCACCAAAGGGTTCCGTTTTTGAGGTATTTGTTCTCGAGTGGTCTCGCACGCTAACGAGAATTACATGGTTCGGCAAGACGAAGAGCGTCTCCCGGCAACACGCCGGCACCGTTTAACGTCTCGGGCCCAAAGGCCGATCAACACCCGGTATATAATTTAATAAGCGAGTTTGTTTGCCTTGCTCGCCCCCTTGGCGCTTATCAGGGATTAAGGACAAACCTTGTGTCCCCGCGCGCCGAGTCGTCCGCTTGTCAGCAGCGCAGTGTGTTGGCGTCGGcacttttgttttgtgttaCAATAAATATTAGTAATAGGATAGCGGGCCACAAGTGCGAAGCGGGATTATTCGCGAATTAGGCGCATTAGAAGATCTATCAAGGAGCTAATTGGAGAATCAATTACTTGGGAGAAATAACTCTAGAGGCTGACTTTATATCACTAAAAACGTTTGACAAAAATGATTTACTAGAAATGTCTTGTAATTTTgtacatttagaaaataaaataacgaAACTTCA

Protein

Uniprot

Uniprot term	Description
O42115	Aristaless-related homeobox protein OS=Danio rerio OX=7955 GN=arx PE=2 SV=1
Q96QS3	Homeobox protein ARX OS=Homo sapiens OX=9606 GN=ARX PE=1 SV=1
O35085	Homeobox protein ARX OS=Mus musculus OX=10090 GN=Arx PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF03826	OAR	OAR motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR003654	Domain	OAR domain	Interproscan
IPR050649	Family	Paired Homeobox Transcription Factors	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24329	HOMEOBOX PROTEIN ARISTALESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09452	ARX; homeobox protein aristaless-related	-	Transcription factors	ko03000	deepkoala