Genomic Location: NC_064047.1:5449812...5462556
NR annotation: XP_032227062.1, solute carrier family 28 member 3 isoform X4 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5502874 |
| Transcript |
| rna-XM_032371171.2 |
| Protein |
| XP_032227062.1 |
| UniProt accession | Description |
|---|---|
| Q9ERH8 | Solute carrier family 28 member 3 OS=Mus musculus OX=10090 GN=Slc28a3 PE=2 SV=1 |
| Q8VIH3 | Solute carrier family 28 member 3 OS=Rattus norvegicus OX=10116 GN=Slc28a3 PE=2 SV=1 |
| Q62773 | Sodium/nucleoside cotransporter 2 OS=Rattus norvegicus OX=10116 GN=Slc28a2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001071 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01773 all species → | Nucleos_tra2_N | Na+ dependent nucleoside transporter N-terminus | Family | Interproscan |
| PF07670 all species → | Gate | Nucleoside recognition | Domain | Interproscan |
| PF07662 all species → | Nucleos_tra2_C | Na+ dependent nucleoside transporter C-terminus | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002668 all species → | Domain | Concentrative nucleoside transporter N-terminal domain | Interproscan |
| IPR008276 all species → | Family | Concentrative nucleoside transporter | Interproscan |
| IPR011642 all species → | Domain | Nucleoside transporter/FeoB GTPase, Gate domain | Interproscan |
| IPR011657 all species → | Domain | Concentrative nucleoside transporter C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10590 all species → | SODIUM/NUCLEOSIDE COTRANSPORTER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005337 all species → | Molecular Function | nucleoside transmembrane transporter activity | Interproscan |
| GO:0005415 all species → | Molecular Function | nucleoside:sodium symporter activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0015293 all species → | Molecular Function | symporter activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:1901642 all species → | Biological Process | nucleoside transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11536 | SLC28A; pyrimidine nucleoside transport protein | - | Transporters | ko02000 | deepkoala |
Transcript abundance of XP_032227062.1 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
