Gene detail

Detailed information of XP_032227092.2 in Nematostella vectensis

Genomic Location: NC_064042.1:15936921...15962371
NR annotation: XP_032227092.2, TBC1 domain family member 23 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5502901

ATGGCGGAAGGTGGAGGAGTTATTGAAGACGATGCCTGGCACACAGACTTGATACTAGCACTCTCGAAACACAACGATACGGAACGACTACGGGAACTTTGTCGAAGTCGCACAATACCGGCTGAAAATAGAGCTGATATTTGGAAGGTTTGCCTTAATGTTGTTGGAAAACCCGACGCTTTAGCAACATGGGATGGAAGATTAGATTTGAACGAGCAAGACCAAATTCGAAACGACTGCCAAAGACAAGCCGGTAAATTGCCCCTCCACGGCGACGATGCTGATGAGGTTGCGAAAGACATGGAAGTCATAATAACATTCTACTGCAAGTCGCGCAGTGAGAAGTACCGCACATCAAGTGGGTTCACTGAGATCCTTGCACCCCTGATGATGCTGGATCTTCCTGTTAGTGATGTCTACAACTGTTTCTACTCTTTACTTTACAAATTTATTCCAAGGGATTGTGTCCGGGATGGTAAACCATTCCACCTGTTCCGGTTATTACTGCAGTACCATGACCCAGAGCTCTGTTCCTTCATGGACTCTAGGAAACTCTCACCAGACTCCTACTGTCTAACGTGGGTAAGCTATATATGGAAACTCTCACCAGACTCCTACTGTCTAACGTGGCTGAGAAGTCTGTTAGTTGGTGCTGTTGAGCCAGATGTAGTCCGTACCTTATGGGATGTGTACCTCCTTGAGTCAGATCCCTTCCTCATCTTCTTCTTAGTTCTCGTCATGATCGTCAATGCCAAGGATCAGATATTTGAATTAAAAACAGCTAGTAAGGCAGACATTTTAGATTTAATAGCATCTATTCCATCTCAACTGGAAGTTGAGGACATTGAAGACTTCTGCTCTTTAGCTCAATACTATGCATCAAGAACTCCACAGTCTTTTAGAAAGGATTACTATAGCCAGTTATTTGGCATCAAAACCATCAGCACTAACAGTATATCCCAGGCCTTGTGTCTTCCTGTGTCTATCTCAGAGCTGCTGGACTCGAACCAGTCAGAGGTGAAGGATGGAGTACGGTTCTTCGTGGTGGATTGTCGACCCGCTGATCAGTACAATAATGGTCATCTACCTACGGCATTCCACTTGGATGCAAACCTGATGCTGCAGGCGCCGGCCGAATTCGCCACGGCAGCCCAAGCCCTGTTTGCCACTCAGAAGCAGTCCATAGCGGCGGGTTCAGTAGCGGGGGGCGAGCACTTGTGTTTCATGGGCTCAGGCAGGGAAGAAGAGGATCAGTATGTACACATGGTCATCGCAAACTTCTTACAGAGGAAAGCCAAGTATGTCAGCTTAGCAAGAGGCGGATATCAAGCGCTTCATGAGCTACTGTCCGACGACCTGTCCGCCAGCCTGTCCGACCACTCGATGCAGAAATGTATCGTGTGCGCGCCGGGTTCGTACTCTGAAGACGAGAGTTATCACGAGCTCTCCAGAGGTGACCAGAGTCCAACGGATGGAAAAAGCGGTCTAGTGGGCATGCTGTCCTCCGCGCTGCTGTCAAGGGGTGCAAATGTGAAGGAAAAGATTGGCCACTTCATCGCCGAGTCAAGTCAACCCGTTGAAAGGCACGTGAGCAGTACGGATCGCCCTGGTCGGCGCTACAGGGATGTACAGCCGGTCTTTAGTATCGACGATGACGACGATGAGGCCGATACCTACAGTGTGTCCAGCTCAGAAGATGAAGCCCGCAAAGAGGCTGTGAATTTGGACACGTGGCTCAACAGAAAGGATGTTCTAGGCTCATTCAAATGCCAGGAAGTCTTAGCAAATGGCTACCTGGCAAACAGCCATATCCTGCTAACAGAACTCCACATGTTTGTACTGCGAGAAATCCCGAAAAGACCAGGATGGGCCCACATACAGCACCGGCATCACTTTAGCAATGTTGTAAAGATCACTTCCAAGCGGAAACACCCAGAACTGATTACATTCAAATATGGAATTGCATCTGATGATGATGATATACAAGTCAAATCTGTTGAACGATACATCATACCAAATGCGCAGAAAGCTACTAAGAAAATTAGAGACAGAATCATGAAGGTTATCGGGGAGTAA

Transcript

rna-XM_032371201.2

CCTCTGTCCCGTTAATATCCCGCGCGCACAAAATTCGCGGGATCGTAGAGGTGCATCTCGGGATATGTGTTGAAGATGACGTAGCCAAGATGGCGGAAGGTGGAGGAGTTATTGAAGACGATGCCTGgcACACAGACTTGATACTAGCACTCTCGAAACACAACGATACGGAACGACTACGGGAACTTTGTCGAAGTCGCACAATACCGGCTGAAAATAGAGCTGATATTTGGAAGGTTTGCCTTAATGTTGTTGGAAAACCCGACGCTTTAGCAACATGGGATGGAAGATTAGATTTGAACGAGCAAGACCAAATTCGAAACGACTGCCAAAGACAAGCCGGTAAATTGCCCCTCCACGGCGACGATGCTGATGAGGTTGCGAAAGACATGGAAGTCATAATAACATTCTACTGCAAGTCGCGCAGTGAGAAGTACCGCACATCAAGTGGGTTCACTGAGATCCTTGCACCCCTGATGATGCTGGATCTTCCTGTTAGTGATGTCTACAACTGTTTCTACTCTTTACTTTACAAATTTATTCCAAGGGATTGTGTCCGGGATGGTAAACCATTCCACCTGTTCCGGTTATTACTGCAGTACCATGACCCAGAGCTCTGTTCCTTCATGGACTCTAGGAAACTCTCACCAGACTCCTACTGTCTAACGTGGGTAAGCTATATATGGAAACTCTCACCAGACTCCTACTGTCTAACGTGGCTGAGAAGTCTGTTAGTTGGTGCTGTTGAGCCAGATGTAGTCCGTACCTTATGGGATGTGTACCTCCTTGAGTCAGATCCCTTCCTCATCTTCTTCTTAGTTCTCGTCATGATCGTCAATGCCAAGGATCAGATATTTGAATTAAAAACAGCTAGTAAGGCAGACATTTTAGATTTAATAGCATCTATTCCATCTCAACTGGAAGTTGAGGACATTGAAGACTTCTGCTCTTTAGCTCAATACTATGCATCAAGAACTCCACAGTCTTTTAGAAAGgATTACTATAGCCAGTTATTTGGCATCAAAACCATCAGCACTAACAGTATATCCCAGGCCTTGTGTCTTCCTGTGTCTATCTCAGAGCTGCTGGACTCGAACCAGTCAGAGGTGAAGGATGGAGTACGGTTCTTCGTGGTGGATTGTCGACCCGCTGATCAGTACAATAATGGTCATCTACCTACGGCATTCCACTTGGATGCAAACCTGATGCTGCAGGCGCCGGCCGAATTCGCCACGGCAGCCCAAGCCCTGTTTGCCACTCAGAAGCAGTCCATAGCGGCGGGTTCAGTAGCGGGGGGCGAGCACTTGTGTTTCATGGGCTCAGGCAGGGAAGAAGAGGATCAGTATGTACACATGGTCATCGCAAACTTCTTACAGagGAAAGCCAAGTATGTCAGCTTAGCAAGAGGCGGATATCAAGCGCTTCATGAGCTACTGTCCGACGACCTGTCCGCCAGCCTGTCCGACCACTCGATGCAGAAATGTATCGTGTGCGCGCCGGGTTCGTACTCTGAAGACGAGagttATCACGAGCTCTCCAGAGGTGACCAGAGTCCAACGGATGGAAAAAGCGGTCTAGTGGGCATGCTGTCCTCCGCGCTGCTGTCAAGGGGTGCAAATGTGAAGGAAAAGATTGGCCACTTCATCGCCGAGTCAAGTCAACCCGTTGAAAGGCACGTGAGCAGTACGGATCGCCCTGGTCGGCGCTACAGGGATGTACAGCCGGTCTTTAGTATCgacgatgacgacgatgagGCCGATACCTACAGTGTGTCCAGCTCAGAAGATGAAGCCCGCAAAGAGGCTGTGAATTTGGACACGTGGCTCAACAGAAAGGATGTTCTAGGCTCATTCAAATGCCAGGAAGTCTTAGCAAATGGCTACCTGGCAAACAGCCATATCCTGCTAACAGAACTCCACATGTTTGTACTGCGAGAAATCCCGAAAAGACCAGGATGGGCCCACATACAGCACCGGCATCACTTTAGCAATGTTGTAAAGATCACTTCCAAGCGGAAACACCCAGAACTGATTACATTCAAATATGGAATTGcatctgatgatgatgatatacaAGTCAAATCTGTTGAACGATACATCATACCAAATGCGCAGAAAGCTACTAAGAAAATTAGAGACAGAATCATGAAGGTTATCGGGGAGTAAAACAGCCGTGTTACAAACAGCAAATAAGAAAAATTCATAACCGAGAAGAGACATCATGCTAGTGCCTTGTGCTAGACATAAACACCTATTTCAAGTATCATTGAACCAGCAAACCATGCACCATGAGGTTCCAGGTATTGCTTGAAATGCATTTGAACAATTGTGaaaattagattttttttcatcttttgtaTTCCCAATTTTCAGTAAGCATTTATGCATTGCTGGCTGTGGAACAAGTCATGATACATGATTGAAAGGTTTGATTGTactgaaataggtgtatattgaGATTCCTGAAGTTATTCCTGAGATGAAAAGAACCCATTCTCAAGACTTGCACTGCAGACAATATTCCACATGAAGTCATCCATACattaaacattaaaaataagGTAGTAGTCAtagttttattaaagtttCTCTTCAGAAAGTGCAGTAATTCAGAATCTGATTCCCTGAATATTAAACACTTCGGTTTTTATGGCAAAATATCTTAGGCTTTAAAAGCCTTATCTGATGTTATTACTTAAGTTTGCTATAAAAATTGTTTCAAGAAACACTATAAATAATCAAATCACAGATTTATAGTtgaatcatttttttattcaacaaTAAGATTCATAGCCCAATGATTGCTCCTGAGATTACAGCATAAATTCAAAGtgttcatatttatttttctgcaGTGTAAAGTTGTTAAGTATAAACAAGTGGAGTAGTGGAGTAAAAttacttgaaaataaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F415	TBC1 domain family member 23 OS=Gallus gallus OX=9031 GN=TBC1D23 PE=2 SV=1
Q5R8I6	TBC1 domain family member 23 OS=Pongo abelii OX=9601 GN=TBC1D23 PE=2 SV=1
Q8K0F1	TBC1 domain family member 23 OS=Mus musculus OX=10090 GN=Tbc1d23 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005967 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19430 all species →	TBC1D23_C	TBC1 domain family member 23 C-terminal	Domain	Interproscan
PF00581 all species →	Rhodanese	Rhodanese-like domain	Domain	Interproscan
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR001763 all species →	Domain	Rhodanese-like domain	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR045799 all species →	Domain	TBC1 domain family member 23, C-terminal domain	Interproscan
IPR036873 all species →	Homologous_superfamily	Rhodanese-like domain superfamily	Interproscan
IPR039755 all species →	Family	TBC1 domain family member 23	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13297 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0099041 all species →	Biological Process	vesicle tethering to Golgi	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22555	TBC1D23; TBC1 domain family member 23	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032227092.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

20.8Max TPM

11.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	12.58	13.30
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	10.72	15.72
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	12.40	13.73
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	16.92	18.86
whole 6 week old aboral regenerate · regenerate uncut	3	3	12.49	15.38
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	16.39	20.78
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	8.77	14.00
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	11.65	13.20
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	13.30	14.97
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	13.38	15.07
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	15.45	18.18
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	8.44	13.44
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	12.20	12.76
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	4.67	14.00
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	15.20	18.24
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	5.65	16.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.30
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.25
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.20
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	15.72
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.34
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.09
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	13.73
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	12.65
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	10.83
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	18.86
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	17.74
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.15
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	15.38
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.09
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.99
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	20.78
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	16.37
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	12.02
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	14.00
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	12.32
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.20
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.10
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.65
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	14.97
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.58
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.35
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	15.07
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	14.74
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.34
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	18.18
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	14.08
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	14.08
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.44
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	11.88
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.76
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.47
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.37
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.00
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	18.24
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	14.97
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	12.39
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	16.96
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.