Gene detail

Detailed information of XP_032227095.2 in Nematostella vectensis

Genomic Location: NC_064042.1:15966295...15974774
NR annotation: XP_032227095.2, serine/threonine-protein kinase 24 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032371204.2

TCTGTAATGCGTTTCGATGACAGTATGGCGGTTCAGTTGAGGTGCTCTGCTTCCATACTCAACTGagaaaaaacatcaaaatacTGGATTTCCACTATTTCAATTAGTCTTTGGAATTGCACCAGGATGATGGTATAACAAGAGCTTGTTGATCACTTTTGAATAGGCTCTCACGAGTCGTCTAAAGTCGAAGACTTGGCAGCTAGAGAACTTGATGTTTTTTGGGTTCCGGTTGCGAATGTTGTTGTTACTGAATGGCCGCCAGTAACTTGGGAATGAAAGCCGATCCGGAGAAGCTGTTCTCGAAGCTAGAGCGCATCGGAAAAGGATCTTTCGGCGAAGTCTTCAAAGGGATCGATAACCGTACAAATGAAGTCGTCGCTATCAAAATTATTGATTTGGAGGAAGCTGAAGACGAAATAGAAGACATCCAACAAGAAATCACCGTTCTTTCCCAGTGCGATAGCCTCTATGTAACGAAATACCACGGATCTTACCTAAAAgGAACTAAGCTATGGATTATTATGGAGTATCTGGGTGGTGGATCCGCCCTGGACTTGATGAAAGCTGGGAACATAGAGGAATTTTACATAGCTACTATTCTAAGAGAGGTCTTGAAAGGCCTTGATTATTTACATACAGAGAAGAAACTACACAGAGACATTAAAGCTGCTAATGTGCTGATGTCAGAGACTGGTGATGTCAAGTTGGCAGACTTTGGTGTGGCCGGCCAGCTAACAGACACCTTAAACAAGAGGAACACATTTGTTGGAACACCCTTCTGGATGGCCCCTGAAGTTATCAAACAGTCTGCATATGATTCCAAGGCTGATATTTGGTCTTTAGGAATCACAGCAATAGAGTTAGCCAAGGGGGAGCCCCCCAACTCTGACCTGCACCCCATGCGTGTCCTCTTCCTGATCCCTAAGAACAACCCCCCTGAGCTGACAGGCAACTTTAGCAAGGCTTTCAAGGAATTTGTCTCACTCTGCTTGAACAAGGATCCAAATGATAGACCTACTGCAAAAGAGTTGCTCAAGCATCGTTTTATCAAGACAGCCAAGAAAAATGCTTACTTAGTTGAATTAATAGAGAGACATAAGAAGTGGAAGCAGAATAAccacgatgatgatgatagcagTTCAGGGGATGATAGCGATGGtgataatgatgataacagCATGGATTGGGACTTCAACACATTTAAGGGGCCTAAAAATATGCCTAACTTCAAGGACTCTGCAAAGAATGGAGAAGTGTCATCTTCAGACAGAACTATGCAGTCTGAGCAGACATCCAAGCCTAAGCGCCCTGTCTCTCGGTGTTTAAATAATGTTCTAGTACCGGTCCTAACAGAGCTTGCCACTAAATATGGTTCGCAAGGCAAGGTTGTTCAGGAGCTTCAAGAAATTTTCCTCTCGGCAGAAAATGACATGCCTGGATTTTGTGACACTGTGGTAGAAAGAATAGTAAAACGCATCAAAAGCCCAACATAGCGAACTTACTCTTCAAGTTGTCTGTTGAACTACGGGTTGCTTCGGGTGATTGGCCAAGCCCAGGAAGTTTGGTGCTATTTACTTGCTGGAAAAGCAGACGGGAAAAGTGCAACTCTGAGATGAATTCCCAGAACTTACACATCTCCAAAATAGCTCAGTCTCAACTTAAGTCCCCTTAAATTGACCTTTAGGCCCTTATTTTAGCCCTTACTAAAACAGAAGTTGTGCTAGATTTAGTGAGACTTTGAGAATGATTTGAGGTATCTAGAACTGGGTCAAAAGGTACCGGTTAATAGGTGTTCTATGTCTGCAGTCGTTTTGACAGATAATTTCTCTCAGGAGCTTGTGTCTTATCGCCATAGTTTGCAAAGAATTCATGTAATATACAGATGATTTGGAAATGTGAACTCAGACGATTGTTTTGTATAAGAAAGACTACCTATTTCATATGTTTTACAAAGGCTTTTGTATATAATATAACACTTAACAAATAACAACATGACATTTATTCTAGCAACATGCACAAAAAGTAATTTAACCTTTTCTTTTGCAATAATTAACTACGCCTAGTACAACTTTCTTGTAAATGATTGCAGTTCAGTAAAATATGCAGTGGTACTGCATAAGTCTCTGAATCATTTGGAAAATACTCCAACCCCAAAAAACCTGTCTTGGCCGCCAGGGGGCGCTTAATATGTGCCACTGTAGTCTTTGATGttacatttttaaaatggcATTTTATACCAGTGTGATTAAGCAGATTAATCCCTGATCTCCGTGTGGGGATGCAAAAGTATCCTGTAGAGGAGGCGCTTAATTATTGCTACTCCATTATGGCTGCCTAACCTTGCCATATTGTAAATAATATGTCTGTAATTTAACGTAGTGCACTTTTTATCTATAGCTCAAATTATGTCCGAAATTAGAGCCGTTTAACTTTATCAGTGAAACGCAAACTAACATTTTAGCTCCATATTGAGGACCTCTATTCAGCGGACATCATTTTTATAGTAGACACTTCAGGTCGTGATGTCCGATAAATGGGGGTCCCCCTGTAATAAGAATGTGCTGAGGGGAAAGATGAAAGACGGGCAAAATAGACAATTGTGGAGACCTGTGTCAGTATCTTTGCTACTTAGCCGCCACTGGTCACGTTGAAATACTTTAAGTTAGCTACAGTGAAGTGCAAAATGTTGCCACTAGGATTGCTGTTTGGCTCATTTTGGATTTTATTGTGCATGCTGTTGACCCTATcagtaaaaacatttttgggggAGCTTGAAAACCAGTGTTTCTAGAAAAGCCTCAACCTCACGCTCTTGATATGTATTCTACTGTATGTTCATAAATCAGTTTACCACTCATAATAAAATACGTCACTTTGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99KH8	Serine/threonine-protein kinase 24 OS=Mus musculus OX=10090 GN=Stk24 PE=1 SV=1
Q9Y6E0	Serine/threonine-protein kinase 24 OS=Homo sapiens OX=9606 GN=STK24 PE=1 SV=1
B0LT89	Serine/threonine-protein kinase 24 OS=Rattus norvegicus OX=10116 GN=Stk24 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001097 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF20929 all species →	PDCD10_N	Programmed cell death protein 10, dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050629 all species →	Family	STE20/SPS1-related Proline-Alanine-rich Kinase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR046409 all species →	Homologous_superfamily	Programmed cell death protein 10, dimerisation domain superfamily	Interproscan
IPR048288 all species →	Domain	Programmed cell death protein 10, dimerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48012 all species →	STERILE20-LIKE KINASE, ISOFORM B-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08838	STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4	EC:2.7.11.1	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032227095.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

16Conditions

89.5Max TPM

45.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	42.18	47.95
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	37.76	49.10
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	50.24	55.20
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	45.08	52.83
whole 6 week old aboral regenerate · regenerate uncut	3	3	43.97	48.39
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	47.95	52.25
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	47.76	55.83
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	46.60	51.76
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	43.99	53.54
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	47.09	51.89
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	49.94	51.88
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	46.96	54.83
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	42.29	44.10
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	30.95	48.39
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	43.99	56.46
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	60.35	89.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	47.95
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	44.86
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	33.74
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	49.10
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	33.07
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	31.09
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	55.20
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	50.06
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	45.46
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	52.83
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	42.07
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	40.34
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	48.39
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	42.49
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	41.04
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	52.25
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	46.06
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	45.55
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	55.83
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	46.30
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	41.16
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	51.76
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	50.43
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	37.60
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	53.54
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	45.58
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	32.84
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	51.89
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	46.18
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	43.18
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	51.88
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	51.80
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	46.16
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	54.83
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	46.76
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	39.30
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	44.10
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	43.09
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	39.69
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	48.39
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	44.47
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	56.46
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	47.50
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	28.00
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	89.52
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	52.72
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	38.79

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.