Gene detail

Detailed information of XP_032227352.2 in Nematostella vectensis

Genomic Location: NC_064041.1:6651837...6659634
NR annotation: XP_032227352.2, retinoic acid receptor RXR-alpha-A [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_032371461.2

GCGCTTGCCGACCCTGAAATCCCCGGATGGTGTTGTGTCGTAGCGTCTGTGAAGATATAGTAATACGCCATGCTTGGTACAGaaatcacaagatttctgtcccaAAACTGGCCATAATTTCTTAAGAAATAATTAAGACAGCAGTGGTATGCTTTTAAGAAAGGGTATGTGTGAAGAACAACCGTATTATTTCATAAAATGGATGGAAATAAACCTCGCAAACCGAGCGAACTCGAGGGAAGAGAGTTCCAAGATAAAAGAAGAGCCAATGGTATCGTGTCAACTGAAGATAAGATCTTCCCAAGGCCACTGGCTGTTACTCAAGGGTTAAGTCCTCTTTTATTTCATCAGCCTATGTTACCACTACATCGACAACAACCTGGGATGCAGCATTTTCATGCCCCTTACCTAACACAGGCTAGCCTCTTCTTCTCTCCCCAATTAATAAACTCTCACCAGCTCCCATACAGCCAACAACAAATAATAAgtcagaggggaggggtaattCACCAGGTGGCCTCCCTGGTGAGACTAACCACAGAAGAAAGGCTACAACAGGAGTTGAATGGGTCATCACGAGAGCAGTACAGCAGAGATAGACCCATCTCTTCAACCTCTGAAAGATCTCAAGGCTCACCTGAAGCACCCAAATCACAACCGATGAAAGTCATCCATCAAGTTTCTCGAGATGAAAAGGACTATGAACAAGATGACTCTCCTTTATCACAATCCATGTCTTGTGACTCAATGCCTAGTACTCCCAAATCAGAAGCATCGCCCCAAGCGCCAATCAAGTCCCCGGAGACCCCGCCTAGTTTTTCTGCTGCGTCTCCGCGGCCTGTTGTGAATGAGATATGTGCAATATGTCTTGACAAGGCTACAGGCCAACACTATGGTGTCACTAGCTGTGAAGGCTGTAAAGGGTTCTTCAAGAGAAGCGTTCAGAATAAAAAGGATTACACATGCCGCAACCTTACTAAAGACTGTCCCATTGACAAAAGGCACAGAAATAGGTGCCAGTACTGCCGTTTTCAGAAGTGTATCCAGGCTGGAATGATAAAGGAAGCGGTGAGAGAAGATCGTACCCCAGGTGGAAAGCACAAGTCTAGTCTGCTACGGACCAAGTCTGTACAAGATGCAATCCCTTGCAAAATGCGCCGGACAAGCTCAACCTCCTCTTGTAGCTCTGTACTAAGCTCAGCAACAACTGCTGCTCAGGTCAAACCAACCAAAGAGTATATAGAAGTTATTGATGAGCTAATAGGAATATACAAACTGGATAATCAGTCTTGCGATGACTGCCCAGGCTGCAAAGAAACTGGGATGAAAGAAAAGACTCTTGCTCATCTTACCCAGCTTGCAGAACAGCAGCTTGTTAGGTGTGCCAGTTGGTTTAAGCACCTAAAACTGCTAAAGGGCATCTGTGAACTCGACCAGCAAACTCTTGTCACTAATGTTTGGGTGGAGCTTATGCTTGCCAACCTTATCAAGGAGTCTGAGAACTTAGAGAACAAAGCTAAACTCTGTGATGGACAGATTCTGGATTTTGAGACTGCAGAGATTACAGGGATAGGAGACATTTTGCAAAGAGTGGTACAAATGGCAGCTAAGTTTCGTGAGTTTCAGCTGGAGAAAGTGGAGATTGTCTGCATGAAAATGATTATATTATTGAATCCAGATCTACCTGGCTTACGAAATCAACAACTGATTGAGCAACTTCAAGACAAAGTCCACTCTGCCCTACAAGAGCACATCAACCTTGCCTTCCCCAGGGAGCCAAACCGCTTTGGCAACATCTTACTCAGATTGCCCGAGCTGAGGTCCATAGGAACCAAGAGCTTGGAGCGACTGTTCATGTTGAACCTCACAGGACAGATACACCCCTCCACATCCTTGTCAGACCTTCTCCACACTGGCAAGAGATAACCATGCATTCATTATCATATGGGATTGGGGCTATGAAAATAGGAAGCCAAGAGCGAGGTTTTCCCGGTGTCAAACCACTGCGATCTGAAATTGTCCGAGGGGAACGAACCCTGATTACTGTCGTGCCACCACAGGGATGCGGAAGCATGTCTAGAAAAACGAACTGTCTTCTACTGAAAAGCGCCAATCCAACAGTCAGAATCCAATGGTCTTTGTAATAACCGATTGGTTCGTGCGAGTGAGTGATTACACCAGTTGCAGAAATTTAGCTTTGTGATAAGCCTCCACTCAAATGTTCATAAAAGTCATAATGTGCTTGTCATGGTGGGTGTACTAGTTTTGGTTGTGTTTCATTTACCGCATTGGAAAGCTCGCTTTGTGTGAGCAATACCAGGAGCTCCATCAATGTGCAGGACAGCTCTCGAACTCTGAAAACATGAAACTTACATCGTTATAAGGATTTAGGCTTATCCTTACCAGCAGCTCCACCTATGGCAGGTCTGCTATCGAACTGTATCACTAAACGATCACGTGGAATATATCGGGCTTAGTAAGCGTGCTATGTTCCAGAAGTACCAGAAAAAATTGACGAGCTCCTGCCAGAGCCtgatcttaaaaaaaacattatcatAACCATTTTGTTAGTGCTGTGTGGACCGACTTAGATAAAGGTCATAATATATAGTGAATTAGGCTTGCCAGTTTAGAAGTACTGCTTTGACTGATGTATTTTCTACTAGCATGGCACTTTGCAGGCGCCACCGTGGGCACCATGACATGGGTAAGGATAGTAGCCAATAAGGACGCAGATGTTTTGAATGACATGATCTTCAAAATCTTGAATGTTTGCACCATATTTTGAGCTCGCATTTCATTGGTTAAGTGGAGTTCATGTCAGTCAAACTACTTTTCCCGCAATCTGGTTGGCTGGCTTTTAAAAACTGCTAAGCTGCTAAGGTTACAGCGGAAGCACACGTTGCACTGTAACTGATGTAGGCATTCGTTGGTATCGGGTTTTCTAGTTCCTCTAGGTGGAACATAGCAGTACCGTAGCCAACGGTCCCTTGGGTGTTTGAACGAGCCCCTAGTAACAAACACAGACGTCCGCTAACTAGATAAGAAGAAAATGCCATAAAACCTTGTTGGTTACGACTCTCACAGCACGAGTTGTCGATTGGGAATGACTCGAAATTGGTACTTATGCTTGCAGGGACGTCTGCTGTAGATTCACACGGGGTTCCCCTGTATATTCACTTCTATGTGTGATAGCTACGAGAAAGCGAATCTCCCGCTTAGAAGTGTGCTATCACAGAGACCCGAATCACATTAAACTTGTCAGTGTGAAAATACACACTGTTCTAGATTTGTATTGAGTCCTGTGTTGTCATGGTTTCAAGATTTGAGTGTGAAACTATCAGATTAGAATATTTTAACAGGTTTATACACTACAGGCTCTAGTGAGCATTTTTTGTACTTAACGCTATCGTCGTAAAAGGCCAATCTCGTTTTATATTTTGATCACGTATTAATTTGAATAGGTGTGATTCAACTTAAACTGTGAAACAGTTGTAGGATGTAAACACCAAAAAGCGAGGGAGAAAATACAAATTGGTTTCTTTTATGATTATCTAACTATGTACTTAACGGTAGGTAGTGTTTCACGGATTACGTTATTAAAATATCTTACCATA

Protein

Uniprot

Gene family

Uniprot term	Description
Q0GFF6	Retinoic acid receptor RXR-gamma OS=Sus scrofa OX=9823 GN=RXRG PE=2 SV=2
Q5REL6	Retinoic acid receptor RXR-gamma OS=Pongo abelii OX=9601 GN=RXRG PE=2 SV=1
P48443	Retinoic acid receptor RXR-gamma OS=Homo sapiens OX=9606 GN=RXRG PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	ESR-like
Transcription Factors Family	Miscellaneous
Transcription Factors Family	NGFIB-like
Transcription Factors Family	RXR-like
Transcription Factors Family	THR-like
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00104	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003070	Family	Nuclear receptor subfamily 4 group A member 1-3	Interproscan
IPR001723	Family	Nuclear hormone receptor	Interproscan
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR050200	Family	Nuclear hormone receptor family NR3 subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48092	KNIRPS-RELATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan