Gene detail

Detailed information of XP_032227591.1 in Nematostella vectensis

Genomic Location: NC_064039.1:1282616...1295544
NR annotation: XP_032227591.1, double-strand-break repair protein rad21 homolog [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032371700.2

TCGAAAAGGTTGTGGAAGGTTTGATCGAGCTGACAGACCCTCGATTCACAAAATTACGGAATGATTTCTCCTATTTTCTTACTCGTACTCATACGTGTAGGAAATCCAAGAGAATTCTAGAAAGCCCACAAATACATCTGTACACTGCTCTTGTTGACGTCTTCTTTAAACCTTTTGAATGgtcaTTCAACCTTCTTGAAAATGTTCTATTCGCATCAAATTCTGACAAGAAAAGGCAAGCTCGGAATCATATGGCTTGCAGCGAATTACGACGGCTCCAGACGGTTCCTAAGCTCAAGAGATTTTCGCAAAGTGAACATCGTTAAAGCATGCAACGAGATTATAAACCCCAAGTTGCCATTCGCCCTGCGTTTGTCCTCAACTTTGCTAGTGGGCGTTGTTCGTGTACACAGAGAGCAAGCAAGAATAGTGCTGGTTGAGGCCACAGACATGATGAAGGCTGTAAAAGACCTTTTTACAAAACCATCTGCTGATGATCTACAAATGGACCAACCCGTTAGTGATAAGGTATTGACACTGCCTCTGTTGCTTGACTATGAGTTTGATCTGCCCGACTTCTGTGAAGACCGTGTTGTGAATGAACATCTGATAGCCTTAGCAAagTCTGATAGATACCTGCGCATGCCACTCCCTCTGTCTCCGTTTCtcactctcccctcccccatatcTTCGCCTGAGCATCGGATGTCCACTGGGGGTGGTAGTGAGATTATGAGAAGTCCCTTCCAAGCGGAGGCAAAAGACATCACAATAGCTGAGATAGATTTCACCAAGCTCTCTCCGGATATCATCCAGATTCCAGGTGAGCTTGATATCGATGGTGAGTCGCTGCTATCTGGAAATGGCATTGAGATGGTCCCTCCGACCAAACCAAGGGCCCCTCGTGAGCCCTCCAGCAAGCAGCCTCGAGCTAAACGCGGTGAACTGGATCGAGGGCAAACAGGACCAGACCTTCAGAGTCCCGAGGACATTGCCATGGCAGACGCCCCGGAAGACGCAGCAGTAGTTCTATTTGATCAAGCTACCGGTACATTCCAGGCTACACCAGATCTTCCTCCTGTTCCTTCGACGCCTGACACAAAAATTTCCGAGGTCCGTCCAGGGTTTGCCACGCCCGAGGTTCGTGAGGATGAATTGCAGCCCGTGTTGCCTTACACCCCGCGGAAGAGAAAGCTTGCCATTGACCATAACATCAGGCTCAGTAGCAAGGAAATGCGAAAAAACTTCAGGCTCGCGGATCGTCTTTCCAAGGacaagCTGGTGACCTCTTCACGCATGCGTGACGCAAAGGAACTCTTCGGTGCACCTTGTTCGAACGCCCTACAAGCATCGCCCATCCGTGATCTCTGGAAAGAGAACGCGATAGTTACGCCGATGGAGTTTTCAGAGCTTCCTTGGTCTGTCGAGGTACCCGTTACCTTGGAGACGAGCCCCAACGCAGGGAAAGCACTGGAGGCCCCGGGTGAACCAGCGGATGCAGGGGAAGTAGAAGAGGAGGGAATCTCCGGCATTGAATTGCTGAGGGCACAACCTGGCGAGGAGGCATCTTCATTATTTGAACAGTCTTCGAGGCTTGATGTCACGCCGGACGTGCAGCCTTCAGCTTCCAGGCGTCAGTCTCGAGACAAATCTCTCAGCGCTGAGAAAATTGATGACATACCATCGGCAATTCATAGGAGAAGGGCTTCTTCGCTCGTTCATATAGGTCCACTCTCGCCGATTGCAGACGAGGATTTTGAGCCCCTCCATGAGATCGAGGAGCAAGCAACTTTCCTGAGCGACGAGGAGCAAGGTGCAGACTTTGGCATGCCCGAAAAAGCAGCTTTAGAAACACTAAGTGTTATAAGGCGAGTAATGGGCGAAGATCCTTCAATCTCATTGGATGAACTCCTGCCTTTCACAACAAGTAGAAAAGTGGTTGCTAGGGTCTTCTACCACATGATGGCGCTGACATTTTCTGGTATCCTTGAGTTGACGCAAAGTGCACCGTTCGCTGACATTACCATCTCTCAAGGCGTTGCCTTTTAAAGGTTGATACATTACATCCTCCTTGATATGTTTTTCATCTAAAATGTCAAACTATTTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6TEL1	Double-strand-break repair protein rad21 homolog A OS=Danio rerio OX=7955 GN=rad21a PE=1 SV=1
Q8W1Y0	Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana OX=3702 GN=SYN4 PE=2 SV=1
Q3SWX9	Double-strand-break repair protein rad21 homolog OS=Bos taurus OX=9913 GN=RAD21 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006844 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04825 all species →	Rad21_Rec8_N	N terminus of Rad21 / Rec8 like protein	Family	Interproscan
PF04824 all species →	Rad21_Rec8	Conserved region of Rad21 / Rec8 like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006910 all species →	Domain	Rad21/Rec8-like protein, N-terminal	Interproscan
IPR006909 all species →	Domain	Rad21/Rec8-like protein, C-terminal, eukaryotic	Interproscan
IPR039781 all species →	Family	Rad21/Rec8-like protein	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12585 all species →	SCC1 / RAD21 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0007062 all species →	Biological Process	sister chromatid cohesion	Interproscan
GO:0008278 all species →	Cellular Component	cohesin complex	Interproscan
GO:0034991 all species →	Cellular Component	meiotic cohesin complex	Interproscan
GO:1990414 all species →	Biological Process	replication-born double-strand break repair via sister chromatid exchange	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032227591.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.