Gene detail

Detailed information of XP_032227960.2 in Nematostella vectensis

Genomic Location: NC_064038.1:17547525...17577747
NR annotation: XP_032227960.2, semaphorin-3B isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC116611653

ATGAATGCCAGCACAGCAGCATGGAAGTGGCTGCAAATATCATCATTTCTCTTTTGTATTGGAACTTCTATCTCATCCAGTACTAGAACACTTTATCAAAGCTGTTTAGATTGTATAACTTTCCCTCAAAGTACAGAGTATAGTATTATAGATGCAAAACAGATATTTATTGATGATGAACAGAACAAAATAATTGTAGCTACTAGAGGGACTGTGTTAAGACTCACTGCTACATCCCTAAGATTATCATCACCATCTGAAGATATTGTGGATCTTAAACCTAAAGACAGTGCAATACAGCGGTGTATGCAGATGGGGAAGTCACAGGCTGTTTGCCATAACTTTTTCAAACTGCTTTTACTGGATACAAATCAGAGACTCTTTGCATGTGGGACAAATGCTGCAAACCCTACCTGTTGGAGATTCAATAGGACAGCGTCTTTATCACCACTTCCTCCCACTGGCATTGAAGGGGAGACAAGAAGCCCAGAGCTCCCAGACCAGGATGTGACTGGTGTATTTGTCTCTCAACCAGACAATGGGGAATACTTGTTCACTGGGATAAGTATCAGGTCTGGAACGAGGTCCACCATCTACAGAACCACAGCCCAGGACTCTATTAATAATTATTTGGCAACAGAAGGAACTGAAGCCTTCCTTAAAGACGCTCACTTTGTGTCATCATACCACATCCCGGATGAATTCATCTACTTCTTCTTCAGGGAGACTGCCATTGAAGAAAAGCCAAAGGCTGTTTATTCAAGAGTGGGAAGAGTCTGCTCTTATGACTCAGGAGGCTTGTTTGTGCTGAGCAAGAAGTTCACATCATTCACAAAATCAAGAATTGAGTGTGCATCTCCTGGGGATGTACAGTTTAACTTTGACCTGATTCAATCAACTTTCAAGTATGGGGATGGCCCTGAAGCTATTATTTTTGGTGTGTTCACAACACCCAAGAATGGGTTAGCTGGCTCTGCAGTGTGTTTGTATCCCATGAAGACCATCCAGTCAGTATTTGCCTCAAGCTTGTATCTTGAGGAAAAGACTGTAAACCAAGACCCAGTTATTAAGGGCTGGGTCACTACAGGCCTGCCGCAGGGCCTGGAAGCTACTCCTGGAAGACCTAAGTGTTCACCAGATCTGGATACAAAGCGATACAGTGTGGAGGTCTTTAAGTTTGCGAAAGAGCACCCAATTCTTTCAGATAGCATCAAACCAACTGACAAAAAGCCCTTATTCATCAAACAGGGAGTTAGATTTACCCAGATGGTGGTTGATAAAGTCTCTATTGTTGCTGGATCCACTATCAAGACAGTCCCTGTCATGTTTTTAGGAACAGATAATGGTACTGTGTACAAGGTTTTCCAAAATCCCACCTCACAGGAAGTCAGCATTCTTGAGCAGAGAGATGTGATGAAGAATCAGACACCTATTTATCAGATGAAACTTTATAAGGATGCAGTATTTATTGGTGGACATTCAAGTGTGATCCGAATGCCAACACATCACTGTGCCCACTACACCTCGTGCACAACATGTGTCCTGACACGTGATCCCTACTGTGGCTGGAGTGAGGACAAGTGTGTGACCAAAGGACATGCAAACACCAGCTCATGGATTCAGGATATCAATTATGGGGATTCTGCCTCTGTATGCCCAAGTGAGCCCCCAAGTTGTGCCATTGAGGTTATCAAAGAAAACCCAGGACAAGAAACAATCCTGGAGTGTAAAGCAGAGGGGATCCCTGTGCCAGAGGTAGTGGCCTGGGAGAAGGACTCAGTCAAGCTAGCTTATGATGGAAAGTACAGAATCCAGAAGACTGGGTCTCAGGGCTCTCAGAGGCTCTCCATCTCTCCATTTGGAGTGAAACACCTTGGGACATACACTTGCCAAGTTCAAAGTACTATGGGTAAAGCGGATTGTTCACTAGAGGTCAAAGGTTCCTTGCCTGCGGTTACATCTGGGTTTACCAAGCATGCACTAAAGACCTACTTCTCCTGTACCGCCAAGGGCACCCCCCTGCCTAGCATATCCATGTACAAGGTGTCAGGAGGGGTCAGCCAGCTCCTTCCTGGCAATAATGTGTCCATAGAGCAGGACATGGGGTTAAGGGCATACTATTGTGTCGCGCAGAATGCGTTTGGACCTGCTGTTGGTAGGAACTACACTATTGAAGATCGCAAGCTGAAGGTGGGGATCCGTATCACAAGTGAGACGTGGTCAAATGACCTTGGTGACATGACAAGCATCGCATACAGCACCCTAGCAGCCCAAGTGTCAAGTGCTGTGTCAACAGTCTACCATAAGTACCCAGCATTCATCAGGACTACTGAGATAACATTCCGGTCAGGTAGTGTTGTGTGCGAAATGCGACTTCAGTTTGCCACGGATCCCTTGGACAAACACCAGGAGCTACTAAGTGACCTTCAACAAGCTGTTGACGATGGAAAGTTGGTGTCCTTCACAGTGGACAGCAAACACAGGCTGTACAACTACAACACGAAAGGACCCACTGGTGGATATAGAGAGTCAGCCGTGGGAGTTGACAGCGGACTTTTTGTGGTCGCCGTCATGGTAGCCATTCTCATCAGCATCATTATTGGTTTCCTTCTTGGTGTAAAGTTTCACCAGCGAGCTCTTAACACGTGTGGAAAGAAGCCAGAACCTGACGACATAGATGCCACACCCTCTAACAAACACAAGAACGTCACTCACTTGAAGTACACTAAATCTCCTCCTAAACTAATCCACGAGGATGAAACAGAATATCAGGGCACACGGCAGACACTACTGCGGCGTGGACCTGATGGGGCGGAGGCAACAAAAGCAGAAGAAGAATCATCTGACATTGAGTGTGATAGTGACACTTCAACTGCGGGTAGGATAGATTATAGAGCATCTTCACCGAGCTCGCAGGGAAATGGTCGGCTCCCGACAGAGTCAGCTATTTAA

Transcript

rna-XM_032372069.2

gaccaacTGGCTTAAAACCGCGAGTCACAAACCAAAACCACACGGAGCATCAGCTTCGCATCCGTTTACTTGAGACTGAAGTGTCCAAAACAAGCCACAAGAACGATCGACCTCGTCGGACAGTGATCTACCCCACGTGCCTGAAAATTCAAGTCTAAAGTTCTGCTCTGATTTTGAAACGGCCGTACACTCGAAGGATTTAAGCACATGCGCATCGAACGATCGAAAATTTGTAAATCGTGATGGCTGACTGAGTTTGATTGTGATGGTTAACAAATCCTGGGAATAAATCGTGAATGGAGCACTAGCTGAGTAGATCTAGTGCTATATAGAACAACACACAGCCAAGTTGAGCACGGCCATCAAATATGAATGCCAGCACAGCAGCATGGAAGTGGCTGCAAATATCATCATTTCTCTTTTGTATTGGAACTTCTATCTCATCCAGTACTAGAACACTTTATCAAAGCTGTTTAGATTGTATAACTTTCCCTCAAAGTACAGAGTATAGTATTATAGATGCAAAACAGATATTTATTGATGATGAACAGAACAAAATAATTGTAGCTACTAGaggGACTGTGTTAAGACTCACTGCTACATCCCTAagattatcatcaccatctgaAGATATTGTGGATCTTAAACCTAAAGACAGTGCAATACAGCGGTGTATGCAGATGGGGAAGTCACAGGCTGTTTGCCATAACTTTTTCAAACTGCTTTTACTGGATACAAATCAGAGACTCTTTGCATGTGGGACAAATGCTGCAAACCCTACCTGTTGGAGATTCAATAGGACAGCGTCTTTATCACCACTTCCTCCCACTGGCATTGAAGGGGAGACAAGAAGCCCAGAGCTCCCAGACCAGGATGTGACTGGTGTATTTGTCTCTCAACCAGACAATGGGGAATACTTGTTCACTGGGATAAGTATCAGGTCTGGAACGAGGTCCACCATCTACAGAACCACAGCCCAGGACtctattaataattatttggcAACAGAAGGAACTGAAGCCTTCCTTAAAGACGCTCACTTTGTGTCATCATACCACATCCCGGATGAATTCATCTACTTCTTCTTCAGGGAGACTGCCATTGAAGAAAAGCCAAAGGCTGTTTATTCAAGAGTGGGAAGAGTCTGCTCTTATGACTCAGGAGGCTTGTTTGTGCTGAGCAAGAAGTTCACATCATTCACAAAATCAAGAATTGAGTGTGCATCTCCTGGGGATGTACAGTTTAACTTTGACCTGATTCaaTCAACTTTCAAGTATGGGGATGGCCCTGAAgctattatttttggtgtGTTCACAACACCCAAGAATGGGTTAGCTGGCTCTGCAGTGTGTTTGTATCCCATGAAGACCATCCAGTCAGTATTTGCCTCAAGCTTGTATCTTGAGGAAAAGACTGTAAACCAAGACCCAGTTATTAAGGGCTGGGTCACTACAGGCCTGCCGCAGGGCCTGGAAGCTACTCCTGGAAGACCTAAGTGTTCACCAGATCTGGATACAAAGCGATACAGTGTGGAGGTCTTTAAGTTTGCGAAAGAGCACCCAATTCTTTCAGATAGCATCAAACCAACTGACAAAAAGCCCTTATTCATCAAACAGGGAGTTAGATTTACCCAGATGGTGGTTGATAAAGTCTCTATTGTTGCTGGATCCACTATCAAGACAGTCCCTGTCATGTTTTTAGGAACAGATAATGGTACTGTGTACAAGGTTTTCCAAAATCCCACCTCACAGGAAGTCAGCATTCTTGAGCAGAGAGATGTGATGAAGAATCAGACACCTATTTATCAGATGAAACTTTATAAGGATGCAGTATTTATTGGTGGACATTCAAGTGTGATCCGAATGCCAACACATCACTGTGCCCACTACACCTCGTGCACAACATGTGTCCTGACACGTGATCCCTACTGTGGCTGGAGTGAGGACAAGTGTGTGACCAAAGGACATGCAAACACCAGCTCATGGATTCAGGATATCAATTATGGGGATTCTGCCTCTGTATGCCCAAGTGAGCCCCCAAGTTGTGCCATTGAGGTTATCAAAGAAAACCCAGGACAAGAAACAATCCTGGAGTGTAAAGCAGAGGGGATCCCTGTGCCAGAGGTAGTGGCCTGGGAGAAGGACTCAGTCAAGCTAGCTTATGATGGAAAGTACAGAATCCAGAAGACTGGGTCTCAGGGCTCTCAGAGGCTCTCCATCTCTCCATTTGGAGTGAAACACCTTGGGACATACACTTGCCAAGTTCAAAGTACTATGGGTAAAGCGGATTGTTCACTAGAGGTCAAAGGTTCCTTGCCTGCGGTTACATCTGGGTTTACCAAGCATGCACTAAAGACCTACTTCTCCTGTACCGCCAAGGGCACCCCCCTGCCTAGCATATCCATGTACAAGGTGTCAGGAGGGGTCAGCCAGCTCCTTCCTGGCAATAATGTGTCCATAGAGCAGGACATGGGGTTAAGGGCATACTATTGTGTCGCGCAGAATGCGTTTGGACCTGCTGTTGGTAGGAACTACACTATTGAAGATCGCAAGCTGAAGGTGGGGATCCGTATCACAAGTGAGACGTGGTCAAATGACCTTGGTGACATGACAAGCATCGCATACAGCACCCTAGCAGCCCAAGTGTCAAGTGCTGTGTCAACAGTCTACCATAAGTACCCAGCATTCATCAGGACTACTGAGATAACATTCCGGTCAGGTAGTGTTGTGTGCGAAATGCGACTTCAGTTTGCCACGGATCCCTTGGACAAACACCAGGAGCTACTAAGTGACCTTCAACAAGCTGTTGACGATGGAAAGTTGGTGTCCTTCACAGTGGACAGCAAACACAGGCTGTACAACTACAACACGAAAGGACCCACTGGTGGATATAGAGAGTCAGCCGTGGGAGTTGACAGCGGACTTTTTGTGGTCGCCGTCATGGTAGCCATTctcatcagcatcattattGGTTTCCTTCTTGGTGTAAAGTTTCACCAGCGAGCTCTTAACACGTGTGGAAAGAAGCCAGAACCTGACGACATAGATGCCACACcctctaacaaacacaagaacGTCACTCACTTGAAGTACACTAAATCTCCTCCTAAACTAATCCACGAGGATGAAACAGAATATCAGGGCACACGGCAGACACTACTGCGGCGTGGACCTGATGGGGCGGAGGCAACAAAAGCAGAAGAAGAATCATCTGACATTGAGTGTGATAGTGACACTTCAACTGCGGGTAGGATAGATTATAGAGCATCTTCACCGAGCTCGCAGGGAAATGGTCGGCTCCCGACAGAGTCAGCTATTTAAAGGAGATCTGTGAAACAGAGATGCAATGCGTTGTTTTGCAGCTTGATGATGACCATGTGCCGCTGTTAAAAAGCAGCGTATGCTGCTCATCCAACAGTGCAAGTGTTGCAAAGGTGAAGGACGTGTGCAATGGAATGGAAAATATGTTGCTTTTACCAGAAGGGCAATCTGAAAAGATGGTTTCCTTTGAATAAGTAAGATATGTTGCTTATTCAGACATTGTTACAAGCTGTCTAAGAGCTTCAGGAACATGGTATAAAACTTTGGATCAATGTTGTTTCCGAAGAATCAGAAAGAATGATTCTCTCCTGCCCAGTCGTCCTTAGCGTCTTGAATCCCTCGAGACTGACACTAAGGACGGCTACGCAGCAGACTTAGAGCAAATGGTTCAACTaaatttcttaaattttatcTTCGGAAATTCTGTGTTATTATAGTATGTGACATAGAGTTAAAAGTCAATTTTAAAGACCGTTGGAGTTTTTTCACAGCAACAGTAAGTGAAACCATCAATTGAGTTACATATTATGCATTAACGTACATCCACTCTATAGCAAGCCAGCGGGATCCATCTTGTACAAActgttgtttgtttatgtGCCATACATACacataaaaaagtatttttattttgtgaagAATTGTACAGAGAATAATTATGTTTTTAAGATTTTGATTAGCAATAGTTTGCTTGCAATTAAGCTTTTAATGGCTTTAGTTAATTTGCTGTAAACAGTTAGGAATAAAGATTGTGAGATGTTTAAAATCAACATGAAATAAACAATGAAGTACTTTG

Protein

Uniprot

Uniprot term	Description
Q13214	Semaphorin-3B OS=Homo sapiens OX=9606 GN=SEMA3B PE=1 SV=1
Q24322	Semaphorin-1A OS=Drosophila melanogaster OX=7227 GN=Sema1a PE=1 SV=3
Q99985	Semaphorin-3C OS=Homo sapiens OX=9606 GN=SEMA3C PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01390	SEA	SEA domain	Family	Interproscan
PF01403	Sema	Sema domain	Repeat	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF01437	PSI	Plexin repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000082	Domain	SEA domain	Interproscan
IPR027231	Family	Semaphorin	Interproscan
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036364	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001627	Domain	Sema domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR016201	Domain	PSI domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR002165	Repeat	Plexin repeat	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919	Biological Process	negative chemotaxis	Interproscan
GO:0071526	Biological Process	semaphorin-plexin signaling pathway	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06521	SEMA4, CD100; semaphorin 4	-	CD molecules	ko04090	deepkoala