Gene detail

Detailed information of XP_032228023.2 in Nematostella vectensis

Genomic Location: NC_064045.1:7205260...7207246
NR annotation: XP_032228023.2, mitochondrial cardiolipin hydrolase [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032372132.2

GCGCTCAGCGTTTTGGAACTCAAAATTGTTATGAACATGGTCGGCATAGCCGCTGCACGCAGGCTAGGTCGGCACCGTTTCCCGTttatttgggtttcctgtgttttagaGTTCCTTGATCGACTGATGTCAGCGCAGTCGTTCTGCCGCGGTGTCGATGTCAGCGGTAGAAAAGACAACagaaattcaaaatggcggacggtATGATAGGAAAAGTTCGGCTTTGTGTTTTCATCGTCCTTGCATCGCAAGCAGTATATTCCATATTTGACTACCTCAAGAAATCACTCGAATCGAATCGTGAAAATCAAACAGAAGGAATCAAGAAATCGGAAGTGCTTTTTTtccctgataaaaaaatagcatGCCGTCAGTTCCTCTCAGATGGCGGTTGTTCCAGAGATCGATGCTCTTACGCACACGAGGTCACATCCCTAAGCAGACTCATAGATGTCCTTATTAAAGCCAGACGTACGCTAGATGTTTGTGTTTTCACAATCAACTGTTTCGAACTAGCAGATGCTGTGATTCAAATGCACAAACGTGGCGTCGTAATTCGTGTCCTTACCGATAGCGAACAAATAGGCTCCAGCGGATCACAGATAGAAAAATTCCGAAGAGAAGGTATCCAAGTAAGGAATGATTTATCGTCGTTTTTTATGCACCACAAGTTTGCCATTGTTGATGGGGAAGTGCTGGCCAATGGTTCGTTTAACTGGACACGCCAGGCGGTGACTGGAAATAGGGAGAACGTGGTTATTACTTATGAAAGGGAACTTGTGAGAAAGTTTAGCCAAGAGTTCAACAAACTTTGGGAAGAGTATGATCCGAGCAAGAGGTGATCTATCTTATGTCAAACTCTCCAATTTTTGGGGGAAAAATACACTATGGACCCAACCAATCAAAAGCCTTTATGTTTAATGTTATCCAAAACTTAAAGTGGCAATCCCACTAGTTTACTTCCAAAGGGCTGACAAAAACCTCACCCaacaagagacaaaataatttattacaaTCCatgctatttaacaggccaccTACCATAAATCATCAGTCACATTCTCAAACAAACTTCCAGACTCTGTTTTTACATAATCAACCAGAAGTTAACTTGTCTGCTAAGTGCCGTATGATCCTGCATTTTCCCCACCAAGCTTTAACTAACCAGAGAACAACAGCCAGAAAGCAATTAAACAGTTTGAACTCCTTATGTAGACGACAGTTCACACTTGTTCAAAATTGCTGTAAGTAAGAGTTTGACTGACTTCATATTCAAACCTGACAATTCTAGGACATACAGTATAAATTAATTCtcttttaacacattgacccagggataaatggtcttgaagatatgcttCCAACCAgtgtgttggcatctactcttaaaacaaataatagcacaggttctttgacaaatttcaaatcgaacaaggaaagaaaagcagaatcacctctctcaataaaacgctcaaaataccacacaagggagagagatcagcaaacacagctcaaaacacaaatagatacctttattttgatcctccaggttcatttccatgacCTCAATACAACAATGTctactccttgaaggcttgtaaaaccacttgGATGCCTTTgtggattgcaaagcattctgggagatccagggaaaaattcacaaggggagggccagtcaacacttttctccccaaagtcagatgttttttttctcccgagtgacacaaagcatccattttcatcgtATAATTCAAtagagtaaccaagatatttatAAATCATATattgtcaataacatatcagccTTCATttttagattgttattttgaagttttcttgcaaatgaaCGGCTgaattttcaatgataaacaatggGTAATTGACATTGTTTAATTATGCAGGCATTGATGCTccactgtaaaaaaaatcactatgtttaaaatatattgatatatatatattaatgaAAAGGTTATAAGAACTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8IW99	Mitochondrial cardiolipin hydrolase OS=Chlamydomonas reinhardtii OX=3055 GN=CHLREDRAFT_190403 PE=3 SV=1
Q28DT3	Mitochondrial cardiolipin hydrolase OS=Xenopus tropicalis OX=8364 GN=pld6 PE=2 SV=2
A3KNW0	Mitochondrial cardiolipin hydrolase OS=Danio rerio OX=7955 GN=pld6 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009326 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13091 all species →	PLDc_2	PLD-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025202 all species →	Domain	Phospholipase D-like domain	Interproscan
IPR051406 all species →	Family	Phospholipase D domain-containing protein	Interproscan
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43856 all species →	CARDIOLIPIN HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016891 all species →	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16862	PLD6; mitochondrial cardiolipin hydrolase	EC:3.1.4.-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032228023.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

16Conditions

8.1Max TPM

2.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	4.25	5.21
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	2.13	2.72
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.28	2.89
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.78	2.30
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.99	2.27
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	2.53	3.38
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	3.91	4.79
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	3.08	5.22
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	2.51	4.44
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	1.48	1.87
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.88	2.08
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	2.97	4.11
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	4.55	8.07
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	1.73	2.97
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	2.31	3.23
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	3.70	5.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.21
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.84
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.69
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.72
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.06
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.61
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.89
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.19
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.75
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.30
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.83
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.20
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.27
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.89
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.80
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.38
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.77
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.44
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.79
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.93
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.02
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.22
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.21
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.79
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.44
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.80
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.31
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.87
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.45
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.12
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.08
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.85
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.71
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.11
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.51
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.29
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.07
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.86
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.72
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	2.97
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	2.22
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.23
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.07
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.63
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	5.57
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	3.95
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.56

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.