Gene detail

Detailed information of XP_032228433.2 in Nematostella vectensis

Genomic Location: NC_064035.1:18904190...18907632
NR annotation: XP_032228433.2, leucine-rich repeat-containing protein 45 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032372542.2

tgagcggcgaagtcaagtcaagaagaaagaaaacaccgacgagcgataaaatggctgttacaccgcgtttgattcaaatcccgactccagcttgtataatatacTTAAAAGTTATGGAAATGTCTACTAACATCATCAgagaagtacagtaatatctccctctttattttctcacttttacaaaagctcatatacttcagcttgctggctttaatgatcacaaaaatgcaatccctcgctacaaggatagttttatcctcgaagtactacatccccttaacTCATACCGCAACTGcctgtatccttgatgctagaatgaaattttcgatggcataggtttttttttcggtttcaagtcacaaaacgGCGGCAAACAAAAAGATGTAAATGTCAAAGCGCGGGGATAggatggtggttactaaaaatagccagattcggaatcgacatggcgcgcgggtgataccaaagtgtccctctcttatcttatgctctcttggaaACTATAGATTATTTTAGGAAAATTATTATGCAGCTTTATCAAAATAGTGTGCAGATCAATCAAAATACCCATACAGTCGTTTTCGTTAACAAGAGTATGGAGATGACTCAACCAGTTTTTGTGACTTTGAAACTGAAGGTTGGACTTTCTGTGGTTTCCATTCTCGTGCGGACATTTTACTGTCCAGCGGTGTTCTCCCACTTGGCGTCTCTTGCTcttttccgttttgtttttgttgttgtcaccTTTTTGTTTGCCTTTCGCACCTCGACACTATGGAAACTTTCAAGAAAAGGTACTTGAGGGTCTGCAATGAACACATAATTCTTCCACTAGAGTCAGTAATCTCCCACTCCGCGCGAGCTATACCTGAAACAAGTCGATGTTTAGATCTATCTTCGTACAATCTCACCCCTGAAGACTGCCATGCGCTCGCTACCACTTTATCCGACGATCTTTACTTTGAAGAACTGAGCTTTGCAGACTGCCTCTTAAGTGAGGAATCATGTAAGCTCATTCTTCTTGGCCTAATGCAAAACAGATCAATCAAGAGCTTGAATCTGAAGGGTAATAATATCCGTTGTGGTGGCGCCGAGGTTTTGGGTCAGTTTTTGAAACGCAACACAACTGTGCAAAGTTTACAACTTGAATGGAACTCTATTGGACTGTGGGAAAGTGGAATAGCCGCTGTAGCTGAGGGACTTGCTATGAATCAAGTCTTGATTGTTTTGGACTTGAGAAATAATCAGATTAGTCATGAAAGTGCTAGTCATCTAGCAATGGCGTTGCGTAGAAATAGTACACTTAGGGGACTGGACTTGCGCTGGAATAATATCGGGATACTTGGAGGCAGGGAGCTTCTATCTGCATTCAAAGCCAACACGACAATAACCACGCTACAATTAACAGGAAATAACATCCCACAAGATATATTGAAGGCAATTTTTTTGGCAACAAAGCAAAATAATGATAGAAAGTCAGTCAATGAAGAACATCAAGCAAGAACAGAGATGATGGCACGGGAACTTGAGAAACTGGAGACTCTCAAAACAAAAGAGGTCCTAACATTAAGAGATGAAATTGATAGAGAGAGATTCCAACACGCACAAACCAATAAAGCCactcaaaataaaattgatCACCTGAAAAGTGCTTTAGAGGAAAGAAAAGATGCTTTTGACTCACTCTCAGCTAATCTTTCTGCAACTGAAGCTGAACTCTCTGTGTCACAACAGAAGTGCCATGACCTTGAGAACTTGTTGTCAACCCTGAAGAAAGAATTACACACTGAAAGAGAAGACCGTACAAATGCTGAACTGAAGAATCACAAAGAGCTGAACAAGGTTTTAGAAAGAAACATGGAGCTTGAGTCGTCAGTTAGTGCAATGGAGAGAAAAAATAAGGCCTTGGAGAAATCTGTGAATGATCTAGAGAAGGAGATTAAGAAAATGGAGCAAAATTATGAGCTCAAATCTAAAGAAAGTGATGAAAAATTTCATAGAGAACTTCAGAACACTAAAGATAGATTGCAGAAGGACTTTCAAAGCTTCCATCAAAGGACATCAGAAAATAGTCAGAGTATGCAGGATAGAATTTTAAAACTGGAGGAGGAAAGAAACAGTTTAGAGGTAGAGGTTAGCAGACTAAGATCAGAGCTAGTGTCTTCCAAACTTAAAGCAGATGAAGATTTAATGAATGCTAAAACTAAGCTCAAACAGGAGGAATTAGTAAGATCACGCCAATACGACGAACGGATCCACCTCCTTCAAACCTCTTTTGAAGAGCTTCAGTTACAGAGTACAAAACAGCAATCGAAGATTTCAGAACTGCAATCCCAACTCAGTGCTATAACAAGAGAGAATGAAATCAACAAAAGACAGCTGGAGACAATGAAACAGCAGCTAGACCAGAAAGAGTCAGAGTATAGAAATGAGGTGAATCGGTCTCGTCTAGAGCTTGACTCAGAAAGAAAAACCCAGAGTGAACTTCGAGACAGAATTTTGAGTTTGGAGAACCAAATAAACAGTGAAGCAAAGAGGCATAGGGACATACTGGCTCAAAAGGAAAGTGAACTATCTTTTGTTAGTGAACAGCTAAGAACACGGGAATCAGAGATCAAGCGTAATCAGGAAGAGGAAGTTAAACGTGCTGAGATGTTAGAGAAAGCTATTTATAGTTATGTTTCAAGTACTAAAACAGCTTCTAGACCAAACTCTCCATACAAAACTTAGTTTTGCATTTTTAGTCTTgataatgtttttaaaaatattatactaGTGTTGGTTTTAAAgtaatgttattatttataactTCCAGTGTACAGTAAATCAAACACTTTTTAATAACTTATTTGGCTAAACAATTTACTTGACTTGCAGAGTGTTGTTTTATATTGACTATTTTTACAAGGTACAAAGAGTGGTATTATTATGATATTAGTAAGTTAACACTTATATTGTACATTTCTATATAATCAATGGGCATAAGCCATTATTATTTGGTAAACTAATTACATATAGTTAAACAGGTGCCAAATGTGTGCATTTATATGGACAAATATCAATTTATGCACattgatattttatatttttacctACAAAATTTAGAGAACTGAGGCTTAATAAAAGAAAGTAActtttta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZI11	Leucine-rich repeat-containing protein 45 OS=Gallus gallus OX=9031 GN=LRRC45 PE=2 SV=1
Q96CN5	Leucine-rich repeat-containing protein 45 OS=Homo sapiens OX=9606 GN=LRRC45 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008074 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR052116 all species →	Family	Centrosome and Cilium Assembly Protein	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23170 all species →	NY-REN-58 ANTIGEN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25401	LRRC45; leucine-rich repeat-containing protein 45	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032228433.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

38TPM > 0

16Conditions

6.6Max TPM

2.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	3.81	4.13
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.49	4.31
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.17	2.44
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.15	2.63
whole 6 week old aboral regenerate · regenerate uncut	3	3	3.17	3.55
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.91	2.74
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.77	4.96
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	2.16	3.02
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.77	2.65
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.62	2.73
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.67	2.80
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	4.82	6.62
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	2.59	3.34
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.06	3.17
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.77	4.25
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.01	3.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.13
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.91
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.39
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.31
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.43
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.73
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.44
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.10
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.97
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.63
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.20
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.61
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.55
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.26
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.71
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.74
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.96
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.36
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.02
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.25
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.19
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.65
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.65
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.73
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.12
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.80
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.76
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.45
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.62
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.56
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.27
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.34
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.27
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.18
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.17
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.25
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.07
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	3.03
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.