Gene detail

Detailed information of XP_032228447.1 in Nematostella vectensis

Genomic Location: NC_064036.1:18986375...18994823
NR annotation: XP_032228447.1, zinc finger CCHC domain-containing protein 7 isoform X3 [Nematostella vectensis]
Species abbreviation NVECT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032372556.2

AAAGCGTGTTTCAAAATTTGCTTCTTTAAGGATGTATGATTCTCGTTATTTTGAGTTGAAGTGATGACATGTTTTGGATTAGAATTACTTTTAACCAAGTAGGAAAAAGTCTATAACCTTATCTATTCGTGAGCTGTGCACGGGACGTTATTTCATACTCCCCTTGAATAATGAGTGATGTGGAATTTGATGAAGAGAGCTACCAGGCTTATGAAGATGAGCTGTATGGTCAAACTTCTCCAAACAGtgatgatagtgatgttgAGAGTGAAGTCGCAGAGATACTCTACGGACAAGTCCATTACTCTTTCTCATTGCCTGAATCCACAAATAAGGGAAAAGAGGTTATTGAAGTCAGCTCACAGGCTGAATCTTCAGATGAGACACGAAAGGAAGGGTGGCAAGATGATGTTATAGCGATAAGCTCAGATGAGAATGAAAATGAACCTTTGGAGATTACTGaAAACTGGGAGTTGATTGACAAGGATGTGAATGGAGGTAAAGAATTCTCTGGTAAAAGATCTGCTTCTCGCTATTACAAAGAAGAGAAGAGATCAATGTACATCAGATGCCATAATTGTAATGAGAGGGGCCACATGGCCGTGGACTGCCCAGATCCAAAGAAAGTGATTAAGTGCTGTTTGTGTGGTGGGCAAGGCCATTACAAGAGATCCTGTCCAAATGAGTTGTGCTTCAATTGCGATCAGCCTGGTCATCAGTCAAGGTCTTGCAGAAAGCCAAGACGCAGACACTATGACCAGTGTCATCGTTGCTTTCTTGAAGGCCACCTACAAAATGATTGTCCAGATTTGTGGAGGCAGTATCATCGCACGACACAAGTTGGTCGCATAGTCCAACCGACAGAGGATGAAGACACTGATCGTCCAGTTTACTGCTACAACTGTGCAAAAGAAGGACATTATGGTTATGAATGCTCCCAGGATCGCATGGATCCACGGCAAGCCACCTCTTTTCCGTTCATAGTTCATTATGATGGCTGCCcaaccacccccagtgaccgGGGGGGCCATCGACATTTCAGTAATAGGAATCAGTGGGGACACAGTTATCAGGGGGGACACGCCCTTGGGCAGATTGGGGACAAAAGAAGGCACTCATGTCCTAGCCAGCAGCAGCTGCACCAGAGAGATGACAGCGGTCACTCACATGGACATGCTCATACACCGCACTCCCACGAAGGTAAACGAGGGAGAAAAAGAGAACATGACCGGGACCCTGATCAAAACTACAAGAAGTCAATATCAAGCCGCAAAGGACGAAtgcaaatacaaatacaaaacAGTCCACTGGAAGAGGGCCAGAGCAAGAAGaggagaaagaaaaacaagaagcGTGTTAGTGATGAGAAAGAGGAGGATAACACTAGGATGGTGTACTACTCCCTGCCAGATGATCACCCAGGCCTGCAGCGAGACGATGGacccaagaaaaagaaaaagatggGCAAGACTCAGAGACTGGAGctTGTCTCAGCGAAAAAGAGACCACTGCTTCGGCTGGCCCAAGAGCTCGGACGGGCACATCCATACAAGTCAGACTCGACACCAGTCCTCCTCAAGCCCTCGTACAAAAGACCCTCACGGCCAGCCAAGCAGAAACCACGTGACCGCGGTTTTCGCAAGTCCAATACAGACTACCAGAATAGGAAGTTCAATACGATGTGAAGCCCCTGGTGTGGTGGGTTATACACGCAAAGGCAGGGCGGAGTTAGTGCGAGACAAGGGGTATCTTCAGCACAACGTGGGGAGGTAGAAGGAGATAGGAGCTCCGGCTTTTAGCGGTAAagctacaacaacaaaagcagcTTATTCAAAGCTTGTGAATCAGGCAGAAAGGTTCTTTGTCAcaaagggtttattttcattgaattgttttaatttttttcgtcGCTCCCTGGCGTGACGGCCATAGCTGCGTTTATTTTGCCTTGAATTTGCCGTTTGTTCGGAATACCTGCTGGGACCAGGACCCTTGGAGGAAGAAAAGGATCTCTCTCTGAGCGAGATAGATTACATGTTTGCGTAGGctcgaaaaaaaagatgatttCTCTCAGAATGTTATAATGCCATTGGGTGGGTGGTGCCGGGAGTGGCGTGAAAATGTGACAAGGGTCGGGGCTGTTCCATTACAGCTGTGTTAACCCGCCTGCCAATTAGCTTTGCAACTTCTgtgaaaaagctttttttcttcaagCAAAAGCATGGTATTTGTATAATTATGGCAAAAATATTTGCCATGTTTTGCAGACTCTCGCATTACAAGATAAATTTAAAATGTTTGATA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005521 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR051644 all species →	Family	TRAMP complex component and AT-rich DNA-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46543 all species →	ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0031499 all species →	Cellular Component	TRAMP complex	Interproscan
GO:0043629 all species →	Biological Process	obsolete ncRNA polyadenylation	Interproscan
GO:0071031 all species →	Biological Process	nuclear mRNA surveillance of mRNA 3'-end processing	Interproscan
GO:0071035 all species →	Biological Process	nuclear polyadenylation-dependent rRNA catabolic process	Interproscan
GO:0071036 all species →	Biological Process	nuclear polyadenylation-dependent snoRNA catabolic process	Interproscan
GO:0071037 all species →	Biological Process	nuclear polyadenylation-dependent snRNA catabolic process	Interproscan
GO:0071038 all species →	Biological Process	TRAMP-dependent tRNA surveillance pathway	Interproscan
GO:0071039 all species →	Biological Process	nuclear polyadenylation-dependent CUT catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12597	AIR1_2; protein AIR1/2	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.