Gene detail

Detailed information of XP_032228451.2 in Nematostella vectensis

Genomic Location: NC_064036.1:18910343...18924509
NR annotation: XP_032228451.2, dnaJ homolog subfamily C member 11 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032372560.2

GCATTGTCCTGGAGAATAATAACTTAGTATTTAATAAGAAGCATTATTTACAGGTATTAGGTACGGCTATAGGTACTAGAATGGCACCATCATATGCTAATCTTTTTATGGCTAAAGTGGAAAAGGAAATCATAGACTCTTCTCCAGTTAAGCCTTATTTATGGCGTAGGTATATCGATGACATTTTCATGATCTGGACTGAAGGtatcccgcgcgctcgccccgaCCGGCCGAGTGTTCCTGGGCAGCTAACTGTACAatatttcaagatggcggacgccCCGCATGACGAATCTGAAGATGAGGTTGATTACTACGCTGTTTTGGCCGTCCGAAAGGAGGCCAACGAAGACGAGCTGAAGGCCGCGTACCGACGACTATGCGTCCTGTATCACCCAGACAAGCACACTGACCCGGAGAAAAAGAGGGTGGCTGTGCAGTTGTTCAGCAAGGTTCAGAAAGCTTACGAAGTGTTAAGTGACCCAGAGACAAAAGCTATCTATGATGTTTATGGCCAGAAAGGCTTGGATGCTGGTTGGGAGGTCATTGAAAGAAGAAGAACTCCAGCTGAGATTCAAGCAGAGTATGAGCGTCTGCAGAGAGAAAAAGAGGAAAGACGCCTCCAACAGAGAACAAATCCTAAGGGTAGTGTGATAGTTGGTGTTGATGCAACTGACTTGTTTGACCATTACGAAGGACTAGAAGAAAGAGGGTTGCCAAATATAGAAGTTAGCAACATGGCAATAATGCAGTCCATAGAGGCACCCCTAACTCGAATGGATACCGCCACACTGTCAGGCTCTCTTGGAGTGCGTAATGGaaatggtagtggtagtgttgcCTTATCTATGCGGCGAGTCTTGTCCTATAAGGCCTGGGGAGAGGTAGAAGTAGGTGCTGGGGATGGTCCAACCCTAACCTTCAGGGGGTTCAGAAACTTGACAAAAAGAAGCTATGCTACATCTGGGGTAACAATGCAAGTCATCAATGGAACTGCTCTCTCTGCAGGGCTGCAGACAATGGTTGCCAGGCAACTTGACAAGCACACGGTTGGGTATTTGACGTGGAAAGCTGGTGCTCAGTCATCCATGAATACAACAGTCATCCGAGAAACAGAAGACTACAGAGCTGTTTTAACCCTACAGCTTGGTGTACCTAACACATTTGGTGTAGCATCAGTTACAAAAAAATTAGAAGAAACAAGACTAAAGCTAGCTATCAAAGGTGGCATCTTTGGAATGATATTTGAATATGGCATTGAGAAGAAAATATCGCAACACAGTCAGCTGGGCGCGTCCATCAGTATTGGAGTGCCTACTGGAGTCACCTTAAAAATCAAACTCACCAGAGCAACTCAAGTGTACAGTTTCCCAGTATCTCTCTCTGAGCAAATTAGCCCTGCCGCCATATTCTATGGAACAATAGCTCCAGTTGTAGTCTTCTTGGTGGCCAAAGTGCTGGTGGTTAGTCCGTTCAAGAAGCAAGAGCAAGAAAAGGAAGAGGAATTGAACAGAGAGAAGCATGCACAACAGCTGGCAAAGAAGAAACAGGAAGCTGAAGACACAATTAACCTAATGAGGGAATCCTATGAGCGCAACCTGGAGTTTGAGAGTCAGCGTCATGGTCTTGTGATTGTGCATGCCTGGTACGGAAACCTCGTCTCTATGGATGAAAGTCATGATGGCCAGCGTACTGTCCACTCTACGCATGCTCAAGTGATTGACGTCACTGTTCCGGTCCAGTGCCAAGTGCGAGAATCTCGTCTTTTCCTGGCCGAGGGGCCCAAGCACAATCTAAGTGGGTTCTATGATCCGTGCCCAAACCAAGACAAACTTCTGCGAATACGATACGAGTTTAGGGACGCGCTTCACGAGCGCATAGGATGGAGGCCAGTTGACCCTCTCCCGCGCCTAAACGCGCCTACTGTGCCATGCCGAGACCGTGCCTTGGACTAGATAACAAAAACACGATGGTTTGACATCTGGACAACTTTTGATGGAACAACTTCTATTATTCTGGAACAGACGACTTTTTAACATAACTGAAGTTAATTTCAGAGCGAAAATAGGGGAATTTCTTATCTCTAATTTTAAAAAGACATAATCATTAATTATGAAATCGAAGAATAGACCCCTCGGTGTTATGTCAAGGACacagataaatatttttgttatttgttgaGCTTTGTGGGAAGCCTTCTAAGAGAAATGCAGTTCCACTAGCTTGGATGTTTTATGTGTCAAACTAATTTGTTCCATGTTACATTCGTTTGAATGTACTTTGTGTAAAGAACAATAAACTAATTGAGTAAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U458	DnaJ homolog subfamily C member 11 OS=Mus musculus OX=10090 GN=Dnajc11 PE=1 SV=2
Q5RC70	DnaJ homolog subfamily C member 11 OS=Pongo abelii OX=9601 GN=DNAJC11 PE=2 SV=1
Q9NVH1	DnaJ homolog subfamily C member 11 OS=Homo sapiens OX=9606 GN=DNAJC11 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004651 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11875 all species →	DnaJ-like_C11_C	DnaJ-like protein C11, C-terminal	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR024586 all species →	Domain	DnaJ-like protein C11, C-terminal	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR052243 all species →	Family	Mitochondrial inner membrane organizing protein	Interproscan
IPR018253 all species →	Conserved_site	DnaJ domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44157 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042407 all species →	Biological Process	cristae formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09531	DNAJC11; DnaJ homolog subfamily C member 11	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032228451.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

40TPM > 0

16Conditions

18.4Max TPM

8.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	9.48	11.07
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	8.81	10.73
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	6.44	7.54
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	7.92	9.61
whole 6 week old aboral regenerate · regenerate uncut	3	3	6.62	7.62
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	7.67	14.26
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	6.39	10.48
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	11.91	14.34
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	7.20	11.66
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	5.39	8.40
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	7.53	8.84
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	13.14	16.82
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	12.13	14.90
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	10.22	18.42
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	6.62	10.50
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	2.88	8.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	11.07
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.71
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.67
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	10.73
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.80
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.89
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.54
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.02
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.76
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.61
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.52
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	5.64
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.62
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.58
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.65
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	14.26
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	8.75
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.48
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.70
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	14.34
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.69
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.72
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	11.66
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.93
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.40
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.77
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.84
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.52
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.23
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	16.82
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	11.89
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.71
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.90
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.89
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.60
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	18.42
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	12.24
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.50
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.37
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.65
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.