Gene detail

Detailed information of XP_032228534.2 in Nematostella vectensis

Genomic Location: NC_064038.1:1615372...1638278
NR annotation: XP_032228534.2, mucin-12 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5504339

ATGCTACAAGGTAGGGCTGCCGGAATCATGCCGAATCCGTTGGATACGAGGGAAATTTTCTTCACTAATTTGCTGTTGCTGGGTTTCGATCCTGATGCTATGGAAGCAAAAGAGAGTATTCCATTTAATAGGGATATGTTTGTATTGCCAAATAAGAAAGGAATGGAAGTTGTGATGCGATTCTTGTTTGCTCAGCTGAATGCACAAATGGCCTATGAAGAGTTTAGGGACTGCTGGCCTGTCAAGAACAAGACTCAAGAGCAACAGTTCCGCAAAACCTGCTACAACTGGTTGACAAGGCTAAGTAAGGAGGAGCCAGACTCAAACCTCCCCCGAGTCGTACAGTCTTTGTTTCATTCTCCTGGTGGTGATAGATTCTACACCTTCCTGCTGCTGTTTTCATTGTATGTCTTGAAGAAAGTTATTCTACGCGATCATAGTAAAAATGTGGTGTTGCCTCCATTTCCCACCAAAAACATCCACAACCAGCCCTTCAGCCAGGTCATATCCAAAGCTGTTGAAACACAGACTGCTGTTCACAGACAAAGGTGTCTAGACCATGTACAAATTGCCCTGGAAGTACATCATTCCTGGAAAACATATGCTCTGGAGTTGACCAAAGAGAATAGACATCTAAAAAAAAAATTTCGTGAATGTGAAAAGAAGCTGTCTACAGCCCCCGCTAGCAGTCAAATAGCTAAAAGTCTTGCAAAGACAAGTTATCAGCAAGAGGTTGATGCAATAAAAAGAACACAGAAAATACAGAAAGTTAGAGGTCTTTGGCATTCAACTGAAAGTTTCTACATAAGTCATCATCCTCATAGGGAAGTTATCAGTTCCATTTTGACTGGAGATGCTAATAAGTACCACCTGGACTCCACACAGACCCAAGTCAGGGTCCCAGATCTACTTCTTCGAGAATGTGAAAGGGAGCTATCCACAAAAAAAATTGAAAACACCTATGTCAGTGGAAAACTGAATCTCAAAAGCCTTGTTCAGCTCTGCAACCTTTCTCTTCACTTGCTCAAGAACAAGATTAGGCAAGATTCTGTACCAAGTTTTGAAGAGAGTTCAGCCAAGATTAAAAATGAAGTTCATTCTCATCAGACACTTCTCACCAAAGCAGAACAACTAAGGTCAATGCTGGGTACAGAGACCATCTCTGATCTCAAGGACTCAGTCGAATCTTTGAAAGCACACCTTTTCGAGGCAGAACCTGGGTCACATCTGGCTGCCAATTATTCGTTTAATGTTGGACTTGGCCTTGCTCCACCTACCCCTCCAGTGTCGTTCAGAGCAGCAGATACTCCAGACAAGCTGTCTTCCTTTCACCAGTCACTCCGCAGATCACCAGAGGCTGCCGGATCCACCCCTGAGGTTGTTCAAACCTGGACTGAGTCTCTACGAGGAAGGCAGCGCCTGAAAGAACAGAGGAAACAGGACATTTCAAATCACAACCAACCAGCACCAGACCTCAACAGACGTCAGGCGAAGAGATCCAACCTTCCCAAACCAATACCCCGAACATCCTCGGCCAAGCCCAAGGCTCCCCAGAATAAGAAAGCAGGCGTTGTTCCTAAAACAGTAACTCGACCAGCAGCTAAAGCGGCGACTTCCTCTGTCCAGCGACCACGCACCCCTGTGAACGAGGACCCTGTGGTCACGCCCGCTGCAAGGGCGTTGTCTGGCAAATATAAGGCCAAGACTGAGCCCCGGAAGAAGGTCACTGTACAGACACCCAAGCAGAGGATGGGGGAGAGAGCGTGGGTCGCCCAGGCAGTCGCGGACCAGATTATCGGCGTTATGTCTGTGGACCGCCCTGAGTCTGGCGGTTCGTCGCGTAACTCCTCAAGGGCGAGCACTCCGCAGGCTCACGCTATCGAGGATCCACTGGCTGCGTTAGATGACACAGCATTTGTATCACATGATCTCATCCCTCGCACGCCGGCTCCTAAGGAGAAATATGGAGAGACCTCCCTCACACATGACCAGAGCAGTTTCCTTGAACACAGTGATCCAACGAAGGACGATGAGGACATGCTCTCTGCTTTTCACGAGAAACATTCTGTCAGCAACAACAGATCTGCGCCAAGGGAAGGAGGATTGCTTAGGACCTTACTAGACCAAGCGCGTAGCCAGAGGGAGACAGAACCTACAAGGGATGCACTGACGCCCATTCAAGTCAAGAGCGCACTTTTCCAGGAATCACCATCTGAAGAGGTGACAAGACCGCTCACTTCCTGGACTGGCGCGCATAGACCAGCTTCTTCCTGGACTGATGCGCATAGACCAGCTACTTCCTGGACTGATACACAAAGACCAGCTACTTCCTGGACTGATGCACAAAGACCAGCCGTTACCTGGAATGATTCTCCGTTATCTCAGCTGTCATTTGCGAGCCCAGATGACAAAGGCTATGAAAATCACAGAGCATTATCTCCATTCTCATTCCAAACTCCAGGAAAATTCCGTGATTCTTCACCACCAGGTGAAGCATCCACCTCGGATGGGACCACCCCACGGCAAGACTCGCCCTTCACTTTATATCAGAGTGCTCGATCCCAGGGTGTATCGTCTTTACAGCAAGGCTCGCCCTTCACCTCGTATCGAAGTACTGTGTCCCGTGGTGTATCCCCCTTGGTATCTTTTACACCTCTTAAAAGCCAGACATCTGATTTGCGAAGTGAAGAGCCTGGTAGTACGCCTTTGGGATCTAATGTCAATGGACTATTGTCCTTTACACCGCATGGTCAGCAAGAGGGCTCCCCCCATGACCCTGGTACCCCCACTCCTCCAGGGCCCATGCCATCTAGAAACACAGGGGCAACGCGTCTAAACGCATCTCCGCTTTTAGCTTGGAGTACACTGAATACAAGGCAGTACGAAGGGGTTCCTAGGACAGACCCAAGCTGTACTCCACACGTGGCGTCGTCTTCTGAGGCACAAGACAGTCTAGTAAGCTCCATGGACACCCTGCGACACTCAGAAATGCTCAACGACAATGTTACATCATCAAATATAAGTAAAACTACAACCGGTGCATCACCATCTACTCGTGCCAGCCAGAGCCCATTAATCAGCCTCTCAGAGCCAACAATCCCAATCGATGACAGCTTATCTGACGAGGTGACAGACCCTGAGCTACAAGCAAGCAAACGATCGCCATTCGGGAACCTGCACATTGACGCCCATGAAATCAAGGAGACATATCTCAATGGCCGGGAGAGTGGGGTAGAGCCCGCTTGTGCTGGTTTAAACGGCGTCACGGAAGACACACTTCCTCCTAAAGGATCATGCAACGAGGACAGACAACCGGCAGGAGGAGTTACCCAGTCATCATTGCGGTCAGGAGTTACCCAGTCGCCATTGCCGTCGGAAGTCACTCAGTCGCCATTACGGTCAGGTTACGTGTCAGACCTCATGGACAGACTGAACCGCATAAAGCAAGCACAGCGTAACACCTCGTTCTATGCAACGCCACGGTCACAGGAACTGGACTCAAGCGTGCCAGAGGCGAGAGGTCTGGGTGTGAGTCCTGGAGCTTCATGGAATGCCATAGACTCTTTGCGGGCTCAGAAAGTGCGGCAGATGGAGCATGCGCAAACACGCCAGCAGGTGAGTCCCGGGTCCAACACCCACTTGAACTCTCGGCGAGAGCAGGACCCCAATATTGCGACCCCTGCATCCCTTAGGGGTGACACGGAGACTCCCGCTAGGGACCACATGACGTCACAAAGCGGCCAGTCAACTCCGTCATCAATACTTAGTGAGCGGTTCCTCCTTCAGTCACCCTTCAAAGACGCAGAACCCGAAACTTCAGGATCACCCTACCAGAGGGTCTTTACTCTTGATTCGCCGACCGTATCGACACCCGATAATCCCACCCCGTATTTACAAGACTTTGCCAACTCACCTTGGAGCAATGCAGGCTTAAACTACCCCGGACGTGTGATGACCAGCGAGCGAGCATCCACATCTGCTCGGAAAGCCCTGCTGAGTGATGACCCTTACTCGTGGATGTTCCCAGCATCGTCGCCCTTGATGGGTACCTCTGGGAGTCCTGTCACCAATGATGGTACCTCACGAGGACAAGGTGGCAACACGCCGACTCTGCATAGCACCGACCCTCGAGGTGGACTTCCCCCAGCTTCACCTGCCATCGACACGCTCATAGACTTCGACTGA

Transcript

rna-XM_032372643.2

AACTCCTGCTGAACTGTTGAGAAAGCGTTACGCTGCCTCTTTGTATCCCCCATACTTTTCTAACTTGTACAATTCTTGAGTTATTCCCGTGAATTCGAGAGAGCTGCTTACATAGCGATCGTAATCCAGACGCCATGATGGTTTTTACCCAGAGTGCCCCTGAGCCTCGATCAGACGTTACACATCCGGGACCTTGCATAGTCTTGGCGCTAAActcaagatggcggaaattTGCCAAATCTACTATTTTACATACTTTCATAATTTAACCAAAGATTGTGCTTTGCACAGTCATTATTCTtagatattttcaaaaatatacaaattttaaatatGCTACAAGGTAGGGCTGCCGGAATCATGCCGAATCCGTTGGATACGAGGGAAATTTTCTTCACTAATTTGCTGTTGCTGGGTTTCGATCCTGATGCTATGGAAGCAAAAGAGAGTATTCCATTTAATAGGGATATGTTTGTATTGCCAAATAAGAAAGGAATGGAAGTTGTGATGCGATTCTTGTTTGCTCAGCTGAATGCACAAATGGCCTATGAAGAGTTTAGGGACTGCTGGCCTGTCAAGAACAAGACTCAAGAGCAACAGTTCCGCAAAACCTGCTACAACTGGTTGACAAGGCTAAGTAAGGAGGAGCCAGACTCAAACCTCCCCCGAGTCGTACAGTCTTTGTTTCATTCTCCTGGTGGTGATAGATTCTACACCTTCCTGCTGCTGTTTTCATTGTATGTCTTGAAGAAAGTTATTCTACGCGATCATAGTAAAAATGTGGTGTTGCCTCCATTTCCCACCAAAAACATCCACAACCAGCCCTTCAGCCAGGTCATATCCAAAGCTGTTGAAACACAGACTGCTGTTCACAGACAAAGGTGTCTAGACCATGTACAAATTGCCCTGGAAGTACATCATTCCTGGAAAACATATGCTCTGGAGTTGACCAAAGAGAATagacatctaaaaaaaaaatttcgtgAATGTGAAAAGAAGCTGTCTACAGCCCCCGCTAGCAGTCAAATAGCTAAAAGTCTTGCAAAGACAAGTTATCAGCAAGAGGTTGATGCAATAAAAAGAACACAGAAAATACAGAAAGTTAGAGGTCTTTGGCATTCAACTGAAAGTTTCTACATAAGTCATCATCCTCATAGGGAAGTTATCAGTTCCATTTTGACTGGAGATGCTAATAAGTACCACCTGGACTCCACACAGACCCAAGTCAGGGTCCCAGATCTACTTCTTCGAGAATGTGAAAGGGAGCTATCcacaaaaaaaattgaaaacacCTATGTCAGTGGAAAACTGAATCTCAAAAGCCTTGTTCAGCTCTGCAACCTTTCTCTTCACTTGCTCAAGAACAAGATTAGGCAAGATTCTGTACCAAGTTTTGAAGAGAGTTCAGCCAAGATTAAAAATGAAGTTCATTCTCATCAGACACTTCTCACCAAAGCAGAACAACTAAGGTCAATGCTGGGTACAGAGACCATCTCTGATCTCAAGGACTCAGTCGAATCTTTGAAAGCACACCTTTTCGAGGCAGAACCTGGGTCACATCTGGCTGCCAATTATTCGTTTAATGTTGGACTTGGCCTTGCTCCACCTACCCCTCCAGTGTCGTTCAGAGCAGCAGATACTCCAGACAAGCTGTCTTCCTTTCACCAGTCACTCCGCAGATCACCAGAGGCTGCCGGATCCACCCCTGAGGTTGTTCAAACCTGGACTGAGTCTCTACGAGGAAGGCAGCGCCTGAAAGAACAGAGGAAACAGGACATTTCAAATCACAACCAACCAGCACCAGACCTCAACAGACGTCAGGCGAAGAGATCCAACCTTCCCAAACCAATACCCCGAACATCCTCGGCCAAGCCCAAGGCTCCCCAGAATAAGAAAGCAGGCGTTGTTCCTAAAACAGTAACTCGACCAGCAGCTAAAGCGGCGACTTCCTCTGTCCAGCGACCACGCACCCCTGTGAACGAGGACCCTGTGGTCACGCCCGCTGCAAGGGCGTTGTCTGGCAAATATAAGGCCAAGACTGAGCCCCGGAAGAAggtcactgtacagacacccAAGCAGAGGATGGGGGAGAGAGCGTGGGTCGCCCAGGCAGTCGCGGACCAGATTATCGGCGTTATGTCTGTGGACCGCCCTGAGTCTGGCGGTTCGTCGCGTAACTCCTCAAGGGCGAGCACTCCGCAGGCTCACGCTATCGAGGATCCACTGGCTGCGTTAGATGACACAGCATTTGTATCACATGATCTCATCCCTCGCACGCCGGCTCCTAAGGAGAAATATGGAGAGACCTCCCTCACACATGACCAGAGCAGTTTCCTTGAACACAGTGATCCAACGAAGGACGATGAGGACATGCTCTCTGCTTTTCACGAGAAACATTCTGTCAGCAACAACAGATCTGCGCCAAGGGAAGGAGGATTGCTTAGGACCTTACTAGACCAAGCGCGTAGCCAGAGGGAGACAGAACCTACAAGGGATGCACTGACGCCCATTCAAGTCAAGAGCGCACTTTTCCAGGAATCACCATCTGAAGAGGTGACAAGACCGCTCACTTCCTGGACTGGCGCGCATAGACCAGCTTCTTCCTGGACTGATGCGCATAGACCAGCTACTTCCTGGACTGATACACAAAGACCAGCTACTTCCTGGACTGATGCACAAAGACCAGCCGTTACCTGGAATGATTCTCCGTTATCTCAGCTGTCATTTGCGAGCCCAGATGACAAAGGCTATGAAAATCACAGAGCATTATCTCCATTCTCATTCCAAACTCCAGGAAAATTCCGTGATTCTTCACCACCAGGTGAAGCATCCACCTCGGATGGGACCACCCCACGGCAAGACTCGCCCTTCACTTTATATCAGAGTGCTCGATCCCAGGGTGTATCGTCTTTACAGCAAGGCTCGCCCTTCACCTCGTATCGAAGTACTGTGTCCCGTGGTGTATCCCCCTTGGTATCTTTTACACCTCTTAAAAGCCAGACATCTGATTTGCGAAGTGAAGAGCCTGGTAGTACGCCTTTGGGATCTAATGTCAATGGACTATTGTCCTTTACACCGCATGGTCAGCAAGAGGGCTCCCCCCATGACCCTGGTACCCCCACTCCTCCAGGGCCCATGCCATCTAGAAACACAGGGGCAACGCGTCTAAACGCATCTCCGCTTTTAGCTTGGAGTACACTGAATACAAGGCAGTACGAAGGGGTTCCTAGGACAGACCCAAGCTGTACTCCACACGTGGCGTCGTCTTCTGAGGCACAAGACAGTCTAGTAAGCTCCATGGACACCCTGCGACACTCAGAAATGCTCAACGACAATGTTACATCATCAAATATAAGTAAAACTACAACCGGTGCATCACCATCTACTCGTGCCAGCCAGAGCCCATTAATCAGCCTCTCAGAGCCAACAATCCCAATCGATGACAGCTTATCTGACGAGGTGACAGACCCTGAGCTACAAGCAAGCAAACGATCGCCATTCGGGAACCTGCACATTGACGCCCATGAAATCAAGGAGACATATCTCAATGGCCGGGAGAGTGGGGTAGAGCCCGCTTGTGCTGGTTTAAACGGCGTCACGGAAGACACACTTCCTCCTAAAGGATCATGCAACGAGGACAGACAACCGGCAGGAGGAGTTACCCAGTCATCATTGCGGTCAGGAGTTACCCAGTCGCCATTGCCGTCGGAAGTCACTCAGTCGCCATTACGGTCAGGTTACGTGTCAGACCTCATGGACAGACTGAACCGCATAAAGCAAGCACAGCGTAACACCTCGTTCTATGCAACGCCACGGTCACAGGAACTGGACTCAAGCGTGCCAGAGGCGAGAGGTCTGGGTGTGAGTCCTGGAGCTTCATGGAATGCCATAGACTCTTTGCGGGCTCAGAAAGTGCGGCAGATGGAGCATGCGCAAACACGCCAGCAGGTGAGTCCCGGGTCCAACACCCACTTGAACTCTCGGCGAGAGCAGGACCCCAATATTGCGACCCCTGCATCCCTTAGGGGTGACACGGAGACTCCCGCTAGGGACcacatgacgtcacaaagCGGCCAGTCAACTCCGTCATCAATACTTAGTGAGCGGTTCCTCCTTCAGTCACCCTTCAAAGACGCAGAACCCGAAACTTCAGGATCACCCTACCAGAGGGTCTTTACTCTTGATTCGCCGACCGTATCGACACCCGATAATCCCACCCCGTATTTACAAGACTTTGCCAACTCACCTTGGAGCAATGCAGGCTTAAACTACCCCGGACGTGTGATGACCAGCGAGCGAGCATCCACATCTGCTCGGAAAGCCCTGCTGAGTGATGACCCTTACTCGTGGATGTTCCCAGCATCGTCGCCCTTGATGGGTACCTCTGGGAGTCCTGTCACCAATGATGGTACCTCACGAGGACAAGGTGGCAACACGCCGACTCTGCATAGCACCGACCCTCGAGGTGGACTTCCCCCAGCTTCACCTGCCATCGACACGCTCATAGACTTCGACTGACATTGGATCTTGTTGGCTACACTCCATGAGATGAACTGGATACCAGCTTGTTTCTATGCTTCATGCAATGTCATGAGGCATTGAGACGTCCCCATGCCTTGTTTGCGTGCTTCATGAGGAGTTCAATTATACCTTGAGGGCGTGCAGTACACCCACcgttcaaataaggttgcactcgtcGAGAATCCATTGTCGTAACCCGCaatggttcatgggtagcgtataaacGGCTGAAAGCCATGTAAATGTTTATAAGAACGTGAACACGAATTCTACAGTTTTGAAACCTGGATTTGCATTACTTGTATTATTGGATATCTATGAATCCCTGTGGGTTACGGTACATAGATTCTCCAAGTGCAACCTTGAAATAGGCGTTTACATTCGCTCCATTGATCTGTGGAGACTTGCAGTGCTGGATCCGGACCGGCGGACTAATATTACCTCTTATGTGTAACGACATGGGCTCTGCTCCAACACAAGGAGTACATGCATCCGTGGAAACCGAGAGATCACGGCCTTCCTACGTGCCGTTGAAATTAATGCATATTTGTGTAGAGTCAGGTGTTAAAAGACATTGATGGTCAAATCACGCTCCTGTGCATGAGTACAAGAATCTGTGGAAAAAGAGATGTATGGCTAAATACACCCTCTAATGCATTTAGACACGTTAACCTGGGACATTTCACGGTCGAAACGCGCTATACTTCTTCACTGCCTTCATGGTGCATCATACGATAGAGCGGATGGATTCGCTTGAAATGTTAGCTTTGATTGGGACACTTAAGGGTCAAAACAAGCCCTGCCTTCCAGGGATGCATTAGTGAAAAAGTAGAGCCGATGTTGTATATGGACCCGGCACCGAGTGTTGTGTTCCTGTAATACCTTAGTCTTGTAGTATACTCAAGTGCGCAGTGTACAGTTCTCCCTGCGTCAGACTTGTAAACCAATTAGTTATCTGGCAAACAGGGTATTTTATTGTAATAACCGCAGATATAGATTTATATTAAACGCACGGTCATATTGACCACTATACCGTCGGCGAGGCGCGGCCATATTGTCCACTATATCGTCGGTAAGGTGGTGGATTTGGTTTTCGCCTTTTCAATGAAGAAACCCCACCGCCTCGCGCACTCCTGTGaatcatttctttttctagatGAACCAAAATGAAAAAGGGCCGAAATTCATTTTAGGGCGCGCAAGTTCTGCTTTGGCCCCCGAGGAAGAGGCCATTCAGTTTATCTTGTCGCATTTTCATCATCCacatatttaacaattattcCTCAATAATAATGAGGTGCAATTTTTATGCTTTCAAATCCGCCACTTCACACTTGACCGGCTATGAATACGAATATGGCCTACGAATATGTTAGCCAATTATAATGAGCATTTTTAATAGAACGCTAGTGTGATTTGACCAAAAAAACTTATACCACAGGCCTCCCGCCCTCGCCATTTTTAAGAGTCCTAGAAGACACTTGGAACAGTTTAAAGAGACTCAGGTTTCTAAGAACCCACGCAACTGGGTCAATTTTTATGTTCTAATCCATCTAAACAATTTTTGTCTCATTGTAAATATACACCTTTATGACACCTTCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004332 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14661 all species →	HAUS6_N	HAUS augmin-like complex subunit 6 N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028163 all species →	Domain	HAUS augmin-like complex subunit 6, N-terminal	Interproscan
IPR026797 all species →	Family	HAUS augmin-like complex subunit 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16151 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0051225 all species →	Biological Process	spindle assembly	Interproscan
GO:0070652 all species →	Cellular Component	HAUS complex	Interproscan
GO:1990498 all species →	Cellular Component	mitotic spindle microtubule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16589	HAUS6, AUG6; HAUS augmin-like complex subunit 6	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032228534.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

38TPM > 0

16Conditions

5.6Max TPM

1.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	2.27	3.81
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	2.00	2.60
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.73	2.03
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.66	2.03
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.68	2.17
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	2.05	3.85
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	3.85	5.56
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	2.68	3.56
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.08	1.95
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	0.85	1.44
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.37	1.45
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	1.87	3.12
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	1.70	2.90
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	2.10	3.31
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.71	2.62
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.63	1.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.81
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.02
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.60
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.90
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.49
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.03
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.64
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.53
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.03
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.94
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.02
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.17
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.52
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.34
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.85
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.28
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	5.56
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.23
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.78
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.56
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.31
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.16
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.95
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.29
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.44
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.12
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.45
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.34
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.31
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.12
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.49
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.90
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.20
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.31
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	3.00
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.62
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.50
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.90
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.