Gene detail

Detailed information of XP_032228608.2 in Nematostella vectensis

Genomic Location: NC_064044.1:11298543...11308315
NR annotation: XP_032228608.2, uncharacterized protein LOC5504408 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5504408

ATGGAGGAGGTTCCCATCATTGTACAGGGCTACAGGCTCAAAAAACGCTGTGCGCACTTTGTAGGGCCCAAGAAGCTCTTAGGCAAGCAAGCAACCTCGACCCGTCTCATCATCAAGGCAAGCGACGATACCCTCATCGATACAGCTTGGCGGATAGCACCGAAGATGAGCGAAGTAACAATAAAAGAAGAGCAGCTAAGCGACAGCGAAACTTTAGACGAATCAACACCCAGCACAGAACGACCGATCCGCATTAATGGCGGGGAGATTCTGAACAAGTTCAACTCTGCTTTGGCTTCGATCATCACGACATCTAGTAGAAGTTCACAAGCGACACCAGAGGAAAAGGAGAAATTGGCGATGGCGACGCAGAAAAGTCCGAAACTTGCGCCACCAGTGTGGTACAGTAACTCGGCGACCAGGCCTCCTGCCCTGGCTCAGGTGTTCAGTCCCATTTACCAGCAGTACGCCTTCATACACCAGACAGCGGACACTCCCATTAGGCCGATACATGACCCCAGTCTCTCAGTACAGAGGGCTGTGGACGAGTTTGACGAGTTCAACGAGTGGATTGACGGCTCCTGCAAGTTGCGCTACTCAGCGTACTCCCGTGAAGCGCAGGCGCACATTAGCGGCTGGGCCATGAAGTACACCAATAACCACAACAAGTACGTGCTGAAGAAGACGTGTGTTGGCGTGCTCCTGTGTAGCAAGGACTGCACGCTACCCAATGGACTCAAGATTGTCGTCCGACCCGCGATATCAGATAAAGTGCGAGAAAGGCAAATCGGTCAAAATTGTCCAAACGCATCTTGCTCTGGAATTCTCTCTCACAGGAAATGCACAGGTAACAATGGCTACCCCGTGACGCATTTCTGGGTCCATCAGGATGACGGCATCTACTTCGAGTCCAAAGGAACACATGACCACTTCCGGCCTCAGGCACGTAGGGCCACGCCAGACAGGAGCGCTAATCGCACACGTCACCTGAGCTCCAAGGAGGAAGGGACCAATAGCGATGAACCTGAAGAGAGAGGGGCATCTGAGGCAGAGGGAGCAACGTCCGCCACCAAGCCTCCTCAGGGTACCCGCAGAGGACGCAAGCGAAAGCATCCGGACCGATTCCTCCCAGTCCAAAAACTATCATCTTCTTTGTCTCACGCTAGCGAGTTGCTGCGCGGCTTCTCAATAGACGAAGAAGACCAATACGTGTGTGTAACTCTACCTGAGACCGAACATTTAATACAGCGAGCTCTGCTCTCTCACGAGCAGTCCCCTATCGCCCCTTACGGTAGACTGTACCTGCTTTGTCAGACCTTCAAGGACGTGACACCGGGATTCAATTTGCTTGAGACCCGGATCATATGCCACGAGGTCAGCGGTTGGCCTGTTGTCATGGCAACTCTGTATAAACAGGGTACCCGTGAAGGGATTGTGCAGCATATGAAGACGATGGCGAGGCTGTGCTCATCACCGAGAGAAGAGATCTTCTCCCCCAAGTGGCAGATGGTGATTCATGACTTCACGCCTGAACAGGCCCAACTCGCCATCGAGGCCATCGTCAATATGATCATCAATTCCCAAGTCCAGACCCTGCTCCGCGTTTTCCAATACAAAAGCGTCAGTTCTTTGTACAAAATGCTTCGCGAGAAAGTCACCAGTTCAATGCAGAGCTATGAGTCGCACTTCGAGCTGTGCAGACGCGAGATCCTTTCCCGTCTGCAGGATCCCCTACTTACAATGAAATTTGGCGACACGATGAAGAGGTTGACCTCGGACAAGTGCAGCGTACAAGAGTTTGTCAGCGCCGACTGTTTACTTTCAGGAGGAATACTAGGGTCTGTCATCAGAGAGTTCTGGAACTTCTGGGGAAGTAGCCTGGTTGCCAGTAAGGTGTTCCCTGTGGCGGCGTCTGTCCGCGCTCATAGTGAGAGACTGGACATCTGGAGAAAAGTCTACACAGAACTTGAGTGGCCGCTAGAGCATTCTGGGATATCCTTACAAGCCATGAGTGACGTTGTTTTCAGGTGGATCAAATGTCACAGAGAATTCTTCCCCAAAGCAGCGTTACGGGAGATGACAAATCTCAACAGCGGTTTACCACTAACTCGGCTATCCGCTGAGCAACGACTGCAGATGCTGAGGTCAGGACGAGAGAGACTGGGCTCGGCTTTTCACAGGCCCTTATCGTGCCGCACCATTTACATGCCGAGAATGCACTGGATGTGA

Transcript

rna-XM_032372717.2

TTCGACCGTTTTCGAGAACGCGatgcctttttttcttataagaaAACTACTTTTTTGCGTGGGACAAAGCGTTAACACCTTAGCGTATCAACAAGCGATTATTTGAAGTTAATATAGAGCTTGTATCCTCGTTATCGGCGGCTGAATCTCAGCAAACATCACAATTGTCAGAATTGGATATTTTGAAGTCGGTCACGTGACAGGGggattgttttgtgtttgatcTGAGTGCAGGTGAATCGGCGGTCGCACATGTCGCCATGGAGGAGGTTCCCATCATTGTACAGGGCTACAGGCTCAAAAAACGCTGTGCGCACTTTGTAGGGCCCAAGAAGCTCTTAGGCAAGCAAGCAACCTCGACCCGTCTCATCATCAAGGCAAGCGACGATACCCTCATCGATACAGCTTGGCGGATAGCACCGAAGATGAGCGAAGTAACAATAAAAGAAGAGCAGCTAAGCGACAGCGAAACTTTAGACGAATCAACACCCAGCACAGAACGACCGATCCGCATTAATGGCGGGGAGATTCTGAACAAGTTCAACTCTGCTTTGGCTTCGATCATCACGACATCTAGTAGAAGTTCACAAGCGACACCAGAGGAAAAGGAGAAATTGGCGATGGCGACGCAGAAAAGTCCGAAACTTGCGCCACCAGTGTGGTACAGTAACTCGGCGACCAGGCCTCCTGCCCTGGCTCAGGTGTTCAGTCCCATTTACCAGCAGTACGCCTTCATACACCAGACAGCGGACACTCCCATTAGGCCGATACATGACCCCAGTCTCTCAGTACAGAGGGCTGTGGACGAGTTTGACGAGTTCAACGAGTGGATTGACGGCTCCTGCAAGTTGCGCTACTCAGCGTACTCCCGTGAAGCGCAGGCGCACATTAGCGGCTGGGCCATGAAGTACACCAATAACCACAACAAGTACGTGCTGAAGAAGACGTGTGTTGGCGTGCTCCTGTGTAGCAAGGACTGCACGCTACCCAATGGACTCAAGATTGTCGTCCGACCCGCGATATCAGATAAAGTGCGAGAAAGGCAAATCGGTCAAAATTGTCCAAACGCATCTTGCTCTGGAATTCTCTCTCACAGGAAATGCACAGGTAACAATGGCTACCCCGTGACGCATTTCTGGGTCCATCAGGATGACGGCATCTACTTCGAGTCCAAAGGAACACATGACCACTTCCGGCCTCAGGCACGTAGGGCCACGCCAGACAGGAGCGCTAATCGCACACGTCACCTGAGCTCCAAGGAGGAAGGGACCAATAGCGATGAACCTGAAGAGAGAGGGGCATCTGAGGCAGAGGGAGCAACGTCCGCCACCAAGCCTCCTCAGGGTACCCGCAGAGGACGCAAGCGAAAGCATCCGGACCGATTCCTCCCAGTCCAAAAACTATCATCTTCTTTGTCTCACGCTAGCGAGTTGCTGCGCGGCTTCTCAATAGACGAAGAAGACCAATACGTGTGTGTAACTCTACCTGAGACCGAACATTTAATACAGCGAGCTCTGCTCTCTCACGAGCAGTCCCCTATCGCCCCTTACGGTAGACTGTACCTGCTTTGTCAGACCTTCAAGGACGTGACACCGGGATTCAATTTGCTTGAGACCCGGATCATATGCCACGAGGTCAGCGGTTGGCCTGTTGTCATGGCAACTCTGTATAAACAGGGTACCCGTGAAGGGATTGTGCAGCATATGAAGACGATGGCGAGGCTGTGCTCATCACCGAGAGAAGAGATCTTCTCCCCCAAGTGGCAGATGGTGATTCATGACTTCACGCCTGAACAGGCCCAACTCGCCATCGAGGCCATCGTCAATATGATCATCAATTCCCAAGTCCAGACCCTGCTCCGCGTTTTCCAATACAAAAGCGtcagttctttgtacaaaatgctTCGCGAGAAAGTCACCAGTTCAATGCAGAGCTATGAGTCGCACTTCGAGCTGTGCAGACGCGAGATCCTTTCCCGTCTGCAGGATCCCCTACTTACAATGAAATTTGGCGACACGATGAAGAGGTTGACCTCGGACAAGTGCAGCGTACAAGAGTTTGTCAGCGCCGACTGTTTACTTTCAGGAGGAATACTAGGGTCTGTCATCAGAGAGTTCTGGAACTTCTGGGGAAGTAGCCTGGTTGCCAGTAAGGTGTTCCCTGTGGCGGCGTCTGTCCGCGCTCATAGTGAGAGACTGGACATCTGGAGAAAAGTCTACACAGAACTTGAGTGGCCGCTAGAGCATTCTGGGATATCCTTACAAGCCATGAGTGACGTTGTTTTCAGGTGGATCAAATGTCACAGAGAATTCTTCCCCAAAGCAGCGTTACGGGAGATGACAAATCTCAACAGCGGTTTACCACTAACTCGGCTATCCGCTGAGCAACGACTGCAGATGCTGAGGTCAGGACGAGAGAGACTGGGCTCGGCTTTTCACAGGCCCTTATCGTGCCGCACCATTTACATGCCGAGAATGCACTGGATGTGACTGCAAATATGATAAGCTCACAATTCAATGCGAGCAAAGAGATGCCTCCATAGTGCAGAAAGCCGAGAATTCAATTGTACATAGGAATTTAAATTGGAGTGTAAATATGAAAATTTTACGAAATAGAACCCGTTTcgatgtaaataaaaatagcaatAGAAGGTCACAAAGATTACAAAGGTTTATTTCACGCACGTCCCAAGCCAAGAATTTCTTAACTTTCTAGGGTAAGTCTCAAAATGGGAGTTTTGGGCTTATAGATCATTAAGTATATCCGCGGAGTTGATGTTTCTTTAGTGCGGTTCTTTGGCTTTTGGCGTGAAAACAATTCTCGCAATTTGGGTTTCTTTGAAAAGGACACgttctaagaaaaaaaaggaacaattGGTAGTATTCTCACCTGAATACAAGCAAGGAATCTCCACATCAGACATTTATGACCTTTTGATAAAATTATAAATCATTCTCTCCTCATATCTTCCCATCAATAAAAACTAGTTTGAAATGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q27403	Transcription factor glial cells missing OS=Drosophila melanogaster OX=7227 GN=gcm PE=1 SV=2
Q9VLA2	Transcription factor glial cells missing 2 OS=Drosophila melanogaster OX=7227 GN=gcm2 PE=2 SV=4
O75603	Chorion-specific transcription factor GCMb OS=Homo sapiens OX=9606 GN=GCM2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009018 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03615 all species →	GCM	GCM motif protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036115 all species →	Homologous_superfamily	GCM domain superfamily	Interproscan
IPR003902 all species →	Domain	Transcription regulator GCM domain	Interproscan
IPR043021 all species →	Homologous_superfamily	GCM, small domain	Interproscan
IPR039791 all species →	Family	Chorion-specific transcription factor GCM	Interproscan
IPR043020 all species →	Homologous_superfamily	GCM domain, large subdomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12414 all species →	GLIAL CELLS MISSING RELATED/GLIDE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0042063 all species →	Biological Process	gliogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032228608.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032228608.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

11.5Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	1.09	3.26
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	2.68	3.83
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	4.31	5.55
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	3.93	4.19
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.48	3.14
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	5.06	11.52
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	2.72	4.63
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	3.01	4.36
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	2.30	4.59
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.97	3.44
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.61	3.14
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.20	3.31
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	5.00	7.32
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.74	5.21
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.76	5.60
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.09	3.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.26
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.83
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.25
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.97
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.55
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.27
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.12
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.19
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.88
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.71
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.14
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.46
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.82
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	11.52
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.67
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.63
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	3.54
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	4.36
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.97
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	1.70
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.59
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.32
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	3.44
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.47
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.14
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.35
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.34
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.31
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.30
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	7.32
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.47
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.21
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.21
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.60
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.67
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	3.27
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.