Genomic Location: NC_064043.1:4009654...4034353
NR annotation: XP_032228741.2, alpha-mannosidase 2C1 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5504550 |
| Transcript |
| rna-XM_032372850.2 |
| Protein |
| XP_032228741.2 |
| UniProt accession | Description |
|---|---|
| Q9NTJ4 | Alpha-mannosidase 2C1 OS=Homo sapiens OX=9606 GN=MAN2C1 PE=1 SV=1 |
| Q91W89 | Alpha-mannosidase 2C1 OS=Mus musculus OX=10090 GN=Man2c1 PE=1 SV=1 |
| P21139 | Alpha-mannosidase 2C1 OS=Rattus norvegicus OX=10116 GN=Man2c1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003387 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17677 all species → | Glyco_hydro38C2 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | Domain | Interproscan |
| PF01074 all species → | Glyco_hydro_38N | Glycosyl hydrolases family 38 N-terminal domain | Domain | Interproscan |
| PF09261 all species → | Alpha-mann_mid | Alpha mannosidase middle domain | Domain | Interproscan |
| PF07748 all species → | Glyco_hydro_38C | Glycosyl hydrolases family 38 C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015341 all species → | Domain | Glycoside hydrolase family 38, central domain | Interproscan |
| IPR027291 all species → | Homologous_superfamily | Glycoside hydrolase 38, N-terminal domain superfamily | Interproscan |
| IPR041147 all species → | Domain | Glycosyl hydrolases family 38, C-terminal beta sandwich domain | Interproscan |
| IPR000602 all species → | Domain | Glycoside hydrolase family 38, N-terminal domain | Interproscan |
| IPR011330 all species → | Homologous_superfamily | Glycoside hydrolase/deacetylase, beta/alpha-barrel | Interproscan |
| IPR028995 all species → | Homologous_superfamily | Glycoside hydrolase families 57/38, central domain superfamily | Interproscan |
| IPR037094 all species → | Homologous_superfamily | Glycoside hydrolase family 38, central domain superfamily | Interproscan |
| IPR011682 all species → | Domain | Glycosyl hydrolase family 38, C-terminal | Interproscan |
| IPR011013 all species → | Homologous_superfamily | Galactose mutarotase-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46017 all species → | ALPHA-MANNOSIDASE 2C1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004559 all species → | Molecular Function | alpha-mannosidase activity | Interproscan |
| GO:0006013 all species → | Biological Process | mannose metabolic process | Interproscan |
| GO:0009313 all species → | Biological Process | oligosaccharide catabolic process | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0030246 all species → | Molecular Function | carbohydrate binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01191 | MAN2C1; alpha-mannosidase | EC:3.2.1.24 | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of XP_032228741.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
