Gene detail

Detailed information of XP_032228765.2 in Nematostella vectensis

Genomic Location: NC_064043.1:4268233...4281954
NR annotation: XP_032228765.2, ubiquitin-like modifier-activating enzyme 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5504534

ATGTCACTAGCTGGGGACCAAACGACCTCGCCGCCAGCAAAGCGCCAAAGAACTACAGAAAATTCCGACCATCGAACTACCAACAACTCGTTAGCCTGCAACAACCACGTTAACAACTCGTCTCAGTCTGTCAGAGACGAGGGACAAGCTGAAAAAATGGATATTGACGAAGGATTGTACTCACGGCAACTTTATGTGTTGGGGCATGAGGCCATGAAAAAGATGGCTGTTTCCAATGTCCTCATCTCTGGATTGAGGGGTCTTGGTGTAGAAATAGCCAAGAATGTTGTGCTGGGTGGGGTGAAATCTGTCACTCTTCACGATACAGGAGCTGTTGAGCTCTCAGACCTCACCTCTCAGTTTTTCCTGAATAAGAAAGATGTTGGTAAGAACAGAGCGGAGGTCTCACATCCAAGGATTGCAGAGCTTAACACCTATGTCAGTATGTCCGTCAACACCCAGAAGCTAACAGAGGAATTCATCAATAAATTCCAGGTGGTGGTGCTCACAGAGTCCTCTCTAGAAGAGCAGCTATGGATCAGTGATTTCTGTCATTCCAAGGGAATCAAGCTGATCATATCGGACACCAAGGGTCTCTTTGGGCAAATATTTTGTGATTTTGGTGAGAGCTTTACTGTGGTGGACACTAATGGAGAGCAGCCAGTTAGCAATATGATCTCTGCTGTTAGCAAGGATGCACAGGGCGTGGTCACCTGTCTAGATGAACAGAGACATGGCTATGAGACTGGTGATTACGTCACCTTTTGTGAAGTCCAGGGAATGACTGAATTGAATAATTGTGAGCCAAGGGAAATCAAAGTTCTAGGACCATATACCTTTAGTATTGGTGATACCTCTTCATATTCAGACTATGTAAGAGGCGGCATTGTTACTCAAGTTAAGATGCCTAAAATTGTCAAATTTAAATCTTTTCGACAGTCATTGATGGAGCCAGAATTTGTACTGACAGACTTTGCAAAAATGGAGCGACCGAGCCAACTACATCTTGCATTCACATGCTTAAGTGAATACCTCAAGAAACATTCCTCTTACCCAAGACCAAGAAATAAGGAAGATGCAGAAAAGTTTGTTGCCCTGGCAAAAGAACTGAATGGAAAGCTCTGTGCTAAGGTTGATGAAGTAGATGATAAACTGCTGTCCCAGTTTGCTTTTAATGCCAGGGGGGACATCTGTCCGATGCAAGGGGTCATCGGTGGTATAACAGCACAGGAAGTCATGAAGGCTTGCAGTGGGAAGTTCAACCCTATTTACCAGCTGTTGTACTTTGACTGTCTTGAGTGCTTACCAGAAGAATCCGATATTCCCGAGGACCAGTGTCAGGCTACTGGCTCCAGATATGATGGCCAGATTGCAGTTTTTGGTAGTGAATTCCAAAAGAAGCTTGGCCAACAAAAGTACTTTGTTGTTGGTGCTGGCGCCATTGGCTGTGAACACCTGAAAAACTTTGCCATGATGGGGCTAGGGAGTGGTGAGGGAGGTCACATTTACACCACAGACATGGACACCATTGAGAAGTCCAACCTGAATAGGCAGTTCCTTTTCCGGCCTGCCGATGTCCAGAAAATGAAGTCAGAAGTGGCTGCTAGGGCTGTCAAAGTTATGAACCCAGATGTGAACATCACCGCTCATGGCAACAGAGTGGGGCCTGAGACTGAGAAGGTGTATAATGATGATTTCTTCGAGTCATTGAGTGGAGTCACCAATGCACTTGATAATGTAGATGCAAGGATGTACATGGACAGAAGATGTGTGTATTACCGCAAGCCCCTGCTGGAATCAGGGACACTAGGAACCAAAGGCAATGTCCAGGTGGTGTTGCCATTCATGACTGAGTCATACAGCTCTTCACAAGATCCCCCTGAGAAGTCCATCCCAATCTGCACTCTGAAGAACTTTCCCAATGCCATCGAACATACCCTGCAGTGGGCCAGAGATGCATTTGAAGGTCTCTTTACGATTCCTGCTGAAAATGTCAACCAGTATGTGTGTGACCCGAAGTTCATTGAAAGAACAGACAAGCTCCCTGGCATGCAAGCGATGGAGGTTTATGATAGTGTCAAGAAATGTCTAGTGGATGAAAGACCGAAGGATTTTGCTGGATGTGTTTCCTGGGCCCGTCACCTGTTCCAAGAATACTACCACAACACTATCAAACAGCTGCTCTTCAACTTCCCTGCTGATCAGATGACCAGCTCAGGACAGCCCTTCTGGTCTGGTCCAAAGCGTTGTCCCCACCCTCTTGTGTTTGACCCACGAGAGGGTACTCATTTGGACTTCATCTCTGCTGCTGCAAATCTGCGGGCCTACATGTATGGCATCACTGGGTCTAAGGATCAGCAGTACATTCTCGACATACTAAAGGGTATCACTGTACCTGAATTCGTACCAAAGTCTGGTGTAAAAATAGCTGTGACGGACCAAGAAGCAGAAGCTGAAAGAAACACTGGTGGGAACATGGATGAAGACGATGTTGACTCCGTCAAAAGTGCCATGCCCACTCCTGAATCGCTTCAGGGATTCAAAATGAACCCAGCTGACTTCGAGAAGGATGACGACACCAACTTCCATATGGACTTCATTGTGGCGGCATCTAATCTGCGAGCTGCGAACTACGATATCCCTCCCGCAGATAGACATAAGAGCAAGCTGATAGCTGGCAAGATCATCCCAGCCATCGCAACAACCACAGCGATCGTGAGTGGACTCGTCTGTCTTGAGCTCTACAAGCTTGTCCAAGGGAGTAAGAAATATGAAACCTTCAAAAACGGCTTCATCAACTTGGCACTCCCGTTCTTTGGATTCTCAGAGCCTATCGCCGCCCCAAAAAGCAAGTACTACGACACGGAGTTCACACTGTGGGACAGGTTTGAAGTTCAAGGAATCAAGGAAAATGGCGAGGAGATGACCCTACAGGAATTTATTGACTACTTTAAGGAGAAGGAACGCCTGGAGATTACTATGCTGTCGCAGGGCGTGTGTATGCTCTACTCTTTCTTCATGGCGCCTGCGAAGCTCAAGGAGCGCTTGGCTAGCAAGGTAAGCGAGGCCGTGGTGAAGGTATCAAAGAAAAAGATCAAGCCACACGTCAAAGCGCTTGTGTTGGAGCTTTGCTGTAACGACGAGAACGACGAGGATGTCGAGGTCCCGTATGTCCGCTACTCCTTCCGCTGA

Transcript

rna-XM_032372874.2

GCCTGGCCCCTTTCTTTTTGCACGCCGAcaggaaaaagaaagaattcaACCACACTTTGtgggaaaaaatatttctacTTCAACTTAGATTCGTCTGTCGGACTTCCGAGGCTCAGATTCTTTAAACTTTGCTTCTGGGAGTACATTTTGCGTTCGCCCAGGCTAAGAAAGATTTGGATTGATTTGTTGTGCCCGGTAGATGTCACTAGCTGGGGACCAAACGACCTCGCCGCCAGCAAAGCGCCAAAGAACTACAGAAAATTCCGACCATCGAACTACCAACAACTCGTTAGCCTGCAACAACCACGTTAACAACTCGTCTCAGTCTGTCAGAGACGAGGGACAAGCTGAAAAAATGGATATTGACGAAGGATTGTACTCACGGCAACTTTATGTGTTGGGGCATGAGGCCATGAAAAAGATGGCTGTTTCCAATGTCCTCATCTCTGGATTGAGGGGTCTTGGTGTAGAAATAGCCAAGAATGTTGTGCTGGGTGGGGTGAAATCTGTCACTCTTCACGATACAGGAGCTGTTGAGCTCTCAGACCTCACCTCTCAGtttttCCTGAATAAGAAAGATGTTGGTAAGAACAGAGCGGAGGTCTCACATCCAAGGATTGCAGAGCTTAACACCTATGTCAGTATGTCCGTCAACACCCAGAAGCTAACAGAGGAATTCATCAATAAATTCCAGGTGGTGGTGCTCACAGAGTCCTCTCTAGAAGAGCAGCTATGGATCAGTGATTTCTGTCATTCCAAGGGAATCAAGCTGATCATATCGGACACCAAGGGTCTCTTTGGGCAAATATTTTGTGATTTTGGTGAGAGCTTTACTGTGGTGGACACTAATGGAGAGCAGCCAGTTAGCAATATGATCTCTGCTGTTAGCAAGGATGCACAGGGCGTGGTCACCTGTCTAGATGAACAGAGACATGGCTATGAGACTGGTGATTACGTCACCTTTTGTGAAGTCCAGGGAATGACTGAATTGAATAATTGTGAGCCAAGGGAAATCAAAGTTCTAGGACCATATACCTTTAGTATTGGTGATACCTCTTCATATTCAGACTATGTAAGAGGCGGCATTGTTACTCAAGTTAAGATGCCTAAAATTGTCAAATTTAAATCTTTTCGACAGTCATTGATGGAGCCAGAATTTGTACTGACAGACTTTGCAAAAATGGAGCGACCGAGCCAACTACATCTTGCATTCACAtgcttaagtgaatacctcaAGAAACATTCCTCTTACCCAAGACCAAGAAATAAGGAAGATGCAGAAAAGTTTGTTGCCCTGGCAAAAGAACTGAATGGAAAGCTCTGTGCTAAGGTTGATGAAGTAGATGATAAACTGCTGTCCCAGTTTGCTTTTAATGCCAGGGGGGACATCTGTCCGATGCAAGGGGTCATCGGTGGTATAACAGCACAGGAAGTCATGAAGGCTTGCAGTGGGAAGTTCAACCCTATTTACCAGCTGTTGTACTTTGACTGTCTTGAGTGCTTACCAGAAGAATCCGATATTCCCGAGGACCAGTGTCAGGCTACTGGCTCCAGATATGATGGCCAGATTGCAGTTTTTGGTAGTGAATTCCAAAAGAAGCTTGGCCAACAAAAGTACTTTGTTGTTGGTGCTGGCGCCATTGGCTGTGAACACCTGAAAAACTTTGCCATGATGGGGCTAGGGAGTGGTGAGGGAGGTCACATTTACACCACAGACATGGACACCATTGAGAAGTCCAACCTGAATAGGCAGTTCCTTTTCCGGCCTGCCGATGTCCAGAAAATGAAGTCAGAAGTGGCTGCTAGGGCTGTCAAAGTTATGAACCCAGATGTGAACATCACCGCTCATGGCAACAGAGTGGGGCCTGAGACTGAGAAGGTGTATAATGATGATTTCTTCGAGTCATTGAGTGGAGTCACCAATGCACTTGATAATGTAGATGCAAGGATGTACATGGACAGAAGATGTGTGTATTACCGCAAGCCCCTGCTGGAATCAGGGACACTAGGAACCAAAGGCAATGTCCAGGTGGTGTTGCCATTCATGACTGAGTCATACAGCTCTTCACAAGATCCCCCTGAGAAGTCCATCCCAATCTGCACTCTGAAGAACTTTCCCAATGCCATCGAACATACCCTGCAGTGGGCCAGAGATGCATTTGAAGGTCTCTTTACGATTCCTGCTGAAAATGTCAACCAGTATGTGTGtgaCCCGAAGTTCATTGAAAGAACAGACAAGCTCCCTGGCATGCAAGCGATGGAGGTTTATGATAGTGTCAAGAAATGTCTAGTGGATGAAAGACCGAAGGATTTTGCTGGATGTGTTTCCTGGGCCCGTCACCTGTTCCAAGAATACTACCACAACACTATCAAACAGCTGCTCTTCAACTTCCCTGCTGATCAGATGACCAGCTCAGGACAGCCCTTCTGGTCTGGTCCAAAGCGTTGTCCCCACCCTCTTGTGTTTGACCCACGAGAGGGTACTCATTTGGACTTCATCTCTGCTGCTGCAAATCTGCGGGCCTACATGTATGGCATCACTGGGTCTAAGGATCAGCAGTACATTCTCGACATACTAAAGGGTATCACTGTACCTGAATTCGTACCAAAGTCTGGTGTAAAAATAGCTGTGACGGACCAAGAAGCAGAAGCTGAAAGAAACACTGGTGGGAACATGGATGAAGACGATGTTGACTCCGTCAAAAGTGCCATGCCCACTCCTGAATCGCTTCAGGGATTCAAAATGAACCCAGCTGACTTCGAGAAGGATGACGACACCAACTTCCATATGGACTTCATTGTGGCGGCATCTAATCTGCGAGCTGCGAACTACGATATCCCTCCCGCAGATAGACATAAGAGCAAGCTGATAGCTGGCAAGATCATCCCAGCCATCGCAACAACCACAGCGATCGTGAGTGGACTCGTCTGTCTTGAGCTCTACAAGCTTGTCCAAGGGAGTAAGAAATATGAAACCTTCAAAAACGGCTTCATCAACTTGGCACTCCCGTTCTTTGGATTCTCAGAGCCTATCGCCGCCCCAAAAAGCAAGTACTACGACACGGAGTTCACACTGTGGGACAGGTTTGAAGTTCAAGGAATCAAGGAAAATGGCGAGGAGATGACCCTACAGGAATTTATTGACTACTTTAAGGAGAAGGAACGCCTGGAGATTACTATGCTGTCGCAGGGCGTGTGTATGCTCTACTCTTTCTTCATGGCGCCTGCGAAGCTCAAGGAGCGCTTGGCTAGCAAGGTAAGCGAGGCCGTGGTGAAGGTATCAAAGAAAAAGATCAAGCCACACGTCAAAGCGCTTGTGTTGGAGCTTTGCTGTAACGACGAGAACGACGAGGATGTCGAGGTCCCGTATGTCCGCTACTCCTTCCGCTGAACGCACCACCGCAGGCGAACCACAGGACTCCCGCACTAGAAAAAGACTTCGGATTGTAGCTGATTTACACCAAGCAATCTTGTAGTGTCGAACCAAAACGATAAATGCCAAGATACTACGTCTATGTtcgttgtatttttttttagcctgATGTAATGGAATTTTCGTCTTCCTCACTTTTGTCCTCAAAAGTAATATCCGTTTGGTttcgtaaataaaaaaatatatagtcaAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29504	Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus OX=9986 GN=UBA1 PE=1 SV=1
P22314	Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens OX=9606 GN=UBA1 PE=1 SV=3
Q5U300	Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus OX=10116 GN=Uba1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001418 (this species only) · gene tree & orthology
Ubiquitin family	E1\|ThiF\|ThiF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10585 all species →	UBA_E1_SCCH	Ubiquitin-activating enzyme, SCCH domain	Domain	Interproscan
PF16190 all species →	E1_FCCH	Ubiquitin-activating enzyme E1 FCCH domain	Domain	Interproscan
PF16191 all species →	E1_4HB	Ubiquitin-activating enzyme E1 four-helix bundle	Domain	Interproscan
PF09358 all species →	E1_UFD	Ubiquitin fold domain	Domain	Interproscan
PF00899 all species →	ThiF	ThiF family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019572 all species →	Domain	Ubiquitin-activating enzyme, SCCH domain	Interproscan
IPR000011 all species →	Family	Ubiquitin/SUMO-activating enzyme E1-like	Interproscan
IPR032418 all species →	Domain	Ubiquitin-activating enzyme E1, FCCH domain	Interproscan
IPR045886 all species →	Family	ThiF/MoeB/HesA family	Interproscan
IPR042063 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, SCCH domain	Interproscan
IPR042302 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, FCCH domain superfamily	Interproscan
IPR035985 all species →	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan
IPR032420 all species →	Domain	Ubiquitin-activating enzyme E1, four-helix bundle	Interproscan
IPR033127 all species →	Active_site	Ubiquitin-activating enzyme E1, Cys active site	Interproscan
IPR018965 all species →	Domain	Ubiquitin-activating enzyme E1, C-terminal	Interproscan
IPR038252 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, C-terminal domain superfamily	Interproscan
IPR000594 all species →	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR018075 all species →	Family	Ubiquitin-activating enzyme E1	Interproscan
IPR042449 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1	Interproscan
IPR018074 all species →	Conserved_site	Ubiquitin-activating enzyme E1, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10953 all species →	UBIQUITIN-ACTIVATING ENZYME E1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008641 all species →	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan
GO:0036211 all species →	Biological Process	protein modification process	Interproscan
GO:0004839 all species →	Molecular Function	ubiquitin activating enzyme activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0032446 all species →	Biological Process	protein modification by small protein conjugation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03178	UBE1, UBA1; ubiquitin-activating enzyme E1	EC:6.2.1.45	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032228765.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

16Conditions

113.0Max TPM

75.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	73.00	83.98
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	59.11	77.91
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	63.48	67.56
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	67.96	75.06
whole 6 week old aboral regenerate · regenerate uncut	3	3	59.66	61.06
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	71.81	78.64
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	71.29	80.30
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	89.07	107.54
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	85.32	104.99
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	98.35	103.92
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	90.85	99.32
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	85.30	113.01
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	76.46	82.27
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	56.26	88.83
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	71.89	80.68
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	80.98	95.55

Per sample · hover a bar for the full sample record

Show the sample table (48 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	83.98
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	71.15
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	63.86
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	77.91
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	52.21
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	47.21
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	67.56
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	62.85
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	60.03
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	75.06
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	71.31
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	57.50
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	61.06
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	60.14
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	57.79
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	78.64
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	69.20
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	67.59
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	80.30
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	68.37
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	65.21
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	107.54
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	88.27
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	71.40
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	104.99
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	85.98
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	64.99
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	103.92
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	100.70
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	90.42
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	99.32
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	93.58
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	79.64
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	113.01
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	74.70
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	68.20
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	82.27
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	77.60
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	69.52
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	88.83
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	79.97
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	80.68
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	79.93
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	55.06
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	95.55
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	85.09
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	62.31

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.