Gene detail

Detailed information of XP_032229152.2 in Nematostella vectensis

Genomic Location: NC_064042.1:5487507...5497101
NR annotation: XP_032229152.2, serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032373261.2

TCCGGCTCGGCGCGCGCCACTTTCGAGATGTTGTTTATGTGAAGAACTTGAATTTCTTTCGGATTCACCTCGTAAATCATGGATTCCATGGCCTTTTCATTTATCTTATCAACTTGAAGTACATACTGGAAGCTTTGAAAGGACTTGGTGCACTGTAATACTGCGGATTTGGCTGGTTTTACTGGAGCAAGATTATATTACAAACTTTTTCATCTCCTCGATGTCAACGGTAACTTCTAGTTGGGGCGCGTTCTTTAGTCTTGAAAGGAGGATAATTTGGGTTTTAATGACGCTGTTCTGAAAACATTCAGACCTTTGACTTgcccactcgtacccaggagAGATGCTCAAAACTATTGGGCGTAAAAACGTCAGGAAACGTGGGCTTATAAACATTTACAGCACAGATCATAGATAGAAAGTCATTCCTCGATGACACGAATGGCTGTAACACCTCTGCTAAAGGCAAAAGTCGATGAATTATTCCTACGATGGCTATCCATGCCAGAGACTCAAAAGATTCTCCATGAGGACTTAGAGAGAGTCATTGAGGGGCGGCCGATCGCGGAGAAAACCGACAAGAATGTGCTAAGTAATTTGACAGTGGGTTCAAGTCGCTCGGTTTCCCCTCCCGCCCCTAGTTCGTCCCCGACCCCCTCCCGGTCACCTAGAAGTCCGAGAGATGTGAGAGCGCTGAGAAAATCCGGGACAAAAACTCCGCCGATATCGCCAAGGCTAGAGCGGCATGGTTCAGGGAAAAATCTCATGAAGGAGCATGTTAAAATTGACTTAAATGGCTCTGAAATCCGCGAGGGTTGTGCAGCGAATATTCCCCAATTTTACTTTCCAAACGGACCTCCACCACCGAGCGGAAAGAGACTTGAGTTAACTTTCAAACGAGTTTCTGAAGTCTTTGGTGTTTTTGAAGGAGGGAAAGCAAAAAAGGAACAATTCTCATCCGTGACAAAGGCATGTAATCTGCCCTTGTACTGGAAGCAACCACTGTTCGCCTGTGCTGGTGGTAACAAGAATGGCTTTGTCACTCTGCCGATGTTCACATCTATGTGGAGGAGGGTGAGTGCCACCTGCCATGATGATGCCTCAAGGTTCGTGAGGCTGCTGGCCAAGCCAGGTCGTAGCCATCTGGATTCAGAAGATTTTGTACCTCTCATTCAGGATATTGTTCAGTCTCACCCTGGCTTATCCTTCCTTGAGGATGCGCCCGAATTTCACTCAAGATATGTGCATACTGTTATAGCAAGAATCTTCTACAGTGTAAACAGTTCATGGACAGGAAAGATAACAATACCAGAAGTGAGACATAGTAACTTTTTAGAGGTTTTAGCATCTcttgaggaggaggaagataTAAATGAGGTGCTGGAGTATTTTTCAtatgaacatttttatgtaataTACTGCAAGTTCTGGGAGCTTGACACAGACCATGACTTGTTGATTGATGAGAAGGACCTCTGTAAACACAGCAACCATGCCCTCTCCTCTAGGATGGTGAAAAGACTTTTTTCAGGCTGTGTCACAAGGGGTAAAACGTACTTGGAAGGGAAAATGACTTACCCTAAGTATGTGTGGTTCCTGCTGTCAGAAGAAGACAAAAAACACCCAAGAAGTATAGAGTACTGGTTCCGTTGTATGGATCTTGACGGCGATGGCGTGCTGTCCATGTACGAGCTAGAGTACTTCTATGAAGAGCAAGTAGCCAAAATGGACGCTCTTGGGATAGAGACGATGGCTTTTGAAGACTGTCTATGCCAGATTCTTGACATGGTCAAGCCAAAGACTGAggGCAAGATAACCCTGACAGATCTCAAAAACTGCAAGATGGCATTCATCTTCTTCAACACCTTCTTTAATCTGGACAAGTACCTGGAATTCGAACAGAGGGACCCGTTTGGCTCAGCCAGGGAAGTGGCCGACAGTGACTTGCCGCCCCCAACAGACTGGGAGAGATACGCCCAAGAGGAATACGAGCTCCTTGTAGCCGAGGAAGGCGCTGCCGAACAGTGTGACGGCTACGAAGATGACTTTGAGGAAGAAGAGCTCCAGGAATTTAACGCAGAAGACAACATCCTCTCGCTAAAAGGACTGACGAGCGATGAAGAGGACCCTAAACCCTGGGGGATGGTGACAGGGATTGACGAAGGTGATGACGATAAGGACGATGATGACGACTTCAACTTTTACTGAAGGGTGGTCTGCGGCTCCTTCTACTGAAGGGTGTACTTCTGGGTGTCTTCGCGGCTCCTTCTACTGAAGGGTGCACTTCTGGGTGTCTACCTTTGCTGCTGGTTGAGTCGCCAAATGGCTGAGCTCGTGTCAGTGTCACAACGGAGACACCGATACTCATTCCAAATGTGTGCAATAAAGGGTTCTATGATATAGCATACCGATAATCCTATCAATTTTTATAATGGCAGGAGGCTAGTATTCAAGTTGTCCCACGGCTCGAAACACATGGGTGTACAAGCGAAAAGCCAGTAAAGCATTCGTTAAGGGTATATCTCAGTGGCCTTATTGCCATTTACCGTTTCTTTACACAGAAGTTTGTATCGCCCCGTTCAGCAAGGATCCACTCATTGTTATATGTCACCAAATAAAGCCCTGCTAAGAAGATTATTTGGTATTTATTTGGTAGTGGCCGGCTACCGAGATGTGTGATAGCGTGGTTAAGCTTATCGACTTGAATGCAGATGTGCagtaataaaagcaaataaaatatgtataaCATTTGGCGCAATTGTCACATTTCAGTTCCAGGGCAACCAAcgttcttttcatgtaccgtttcaaatgcaaatgcatgtaaATGAACCTAAAACTAATGAACGTATATAttctgaaaaaataaaacggaTGGCATAGATTTTGTTACGAATAAAGGTCAGATAAAGTCTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y5P8	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta OS=Homo sapiens OX=9606 GN=PPP2R3B PE=1 SV=2
Q06190	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha OS=Homo sapiens OX=9606 GN=PPP2R3A PE=1 SV=1
Q9Z176	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit delta OS=Mus musculus OX=10090 GN=Ppp2r3d PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005486 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17958 all species →	EF-hand_13	EF-hand domain	Domain	Interproscan
PF21161 all species →	P2R3B_EF-hand	P2R3B, EF-hand	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR041534 all species →	Domain	PP2A regulatory subunit B'', EF-hand domain	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR048855 all species →	Domain	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha/beta/delta, EF-hand	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14095 all species →	PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0000159 all species →	Cellular Component	protein phosphatase type 2A complex	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11583	PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032229152.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

43TPM > 0

16Conditions

21.1Max TPM

12.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	14.99	16.62
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	13.39	16.73
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	14.12	14.44
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	13.33	14.89
whole 6 week old aboral regenerate · regenerate uncut	3	3	12.85	14.60
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	11.13	21.13
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	18.04	18.97
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	13.54	13.68
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	7.22	11.62
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	10.86	12.56
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	9.24	9.94
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	9.94	16.82
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	12.53	13.85
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	10.73	17.89
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	13.56	14.80
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	8.85	15.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	16.62
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	14.60
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	13.74
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	16.73
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	12.10
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	11.35
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	14.44
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	14.11
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	13.80
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	14.89
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.44
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	11.67
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	14.60
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.70
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	11.26
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	21.13
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	12.26
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	18.97
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	18.34
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	16.81
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.68
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.64
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.29
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	11.62
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	10.05
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	12.56
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.11
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.90
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.94
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.76
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.02
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	16.82
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.00
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	13.85
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	13.17
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.58
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	17.89
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	14.29
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	14.80
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	14.20
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	11.68
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	15.06
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	11.51
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.