Gene detail

Detailed information of XP_032229397.2 in Nematostella vectensis

Genomic Location: NC_064047.1:6551095...6559443
NR annotation: XP_032229397.2, uncharacterized protein LOC5505107 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_032373506.2

GAACGCCTGGTCTAAAATGTGAGTTTTATTGCACACGATGTCAACTTTGGGGTTTTAGCATTTTAGTTTTCCCAATATCGGTGGAAGCAAGCGTAACAAGTGTCATATATACTACATATCCAGCTAAGCCGATGCTTTAACACCTTTTAGCCTGCACAAGCGCTAATTTTTCTCTAGAACATGAAAGGACGAGTGACTATCTTCTCTATAACTGGGTGCCCTTTCTGCGTGCGAGCGAAAACAAAGCTTCGAGATGAGTTAAACCTTGAGTTTGTTGACATAAATTTGGACAGACATCCAGAGAGGCGACAAGAAGCAATGGAGAGAAGTGGAAAGCGAACTGTTCCACAGATCTTCTTTAACAACATTCACGTTGGTGGCTTCGATGACCTCGATAAACTTTCTGCTGATAAGATGGAAGAGCTGATCAAAGAAATCAAAGAAcactcccctcccccagaggcaccccaaccccctccccctgagcCCAGTGAagacacaggcagcccaaatgctgatgatgatgtgtCATTTACCTGTGAGATGGATGAGTATGCAGAGCTAGTAAAAGCCATTAGGGAAAGTGGTCTGGTCAAAGATCACAAGGCAGGCTTTCTCAAAACTTACAGGAACTCATTTATTGGCAGAGAAGTGGTGGATTGGTTAGTCAGCACAAGGCAAATTGAGCGAGAGAAAGCCATCCAAATGTGTAAACAGATAGTTGAGCGACGTTTTGGCCATTCTGTGGAAGGTGAAGAAGTTGAATTCAAGGATGATGCCTCGGTTTATAGATTCCTTGAGGAtgatgaaagtaatgccttgAATGCTGggttgggatccctgtgtgaACCGCGGCCAGCACCAGAGGTTGGGGAGGAGTTGCGTCACCTTATTTTACAGCTCTACAACAAGCATTTATCTCCAGACGGGAAGgGTGTGGACTACACAGCAATGGGGCAGAGCACCCAATTCCAGGATTATGTTAAGCACACAGCCGAACTGCAGCGGGTGAACCTGGAAACAGCTTCACGTGAAGGAAAACTTGCTTTCTTCATCAATATCTACAATGCCCTGGTCATACATGCAACCGTCACTAAGGGACCACCGGTCAACCTGTGGCAGAGATATAAGTTCTTTAACACTGTCAGTTACATCATTGGAGGTCATGTGTATTGCTTGAACGACATCGAGAATGGTGTGTTGCGCTCTAACCGCCGCGCTATTGGCGCCATACGCAGACCATTCAGCAAAAAAGATCCTCGGCTAAAGATAGCACTAGACCAACCTGAGCCCAAGGTCCATTTTGCATTGGTCTGCGGTGCAAAGAGCTGTCCACCAATCAAAACGTACTCTGCTAAGGGAGTTGACGAAGAGCTGAACGTAGCAGCTGAGGCCTTCCTGGAAGGTGAAGACGGTTGTCGAATTAACATGATCAAGCGAGAGATTCGCCTCAGCAAGATCTTTCAGTGGTATAAAGAAGACTTTGGATCAAGTAATGCTGAGGTCGCACGGTTTGTTAGCAGACACATGGCAGAGggagaaaagaaaagtcaaCTGGACGAGCTACTGCACCGCAAAGATTTCAAGGAAGCTAATCCGGCAATGTGTGGTTTGCGACATGGTACCACGAGGACGAAGACGctaataaataagtaaataaatagataggtgaataaataaaacaagaacaacactaaTTATCTCGCTAGGGAGCCTCGATTGAAAAAGTGTTACAAGGAGAATTACAAAAGACAGACTGGGGGAGAATGTTCCAGATCGGACAAAAAAAGTAGAGAGTCTTGAACGCTCACATAGCTACCAGGATGCAACGCTCGCCATTTACACCCTCCACGATTTGATTGAATCATCAACTAGATGATGATGAGTCAGCCAGTGGCATTTAATAACTTACATTTgacttaattttgtttttatttatggcTGAACTATTTAATTCTATGGTACTTTGTACATAAAATAAATGCTATaatggtatttttaaatagttaaaactatttactattattatatttacttATTAACCATAATCATATACAAccataaaagaaatatttattcTCAGTAGAAACTAGCGCAATGTCAATTaaaaaatcacaaatcattAAAACTTGTTTGGGCGAAATTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68XG4	Glutaredoxin 1 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=grxC1 PE=3 SV=1
Q9ZDW1	Glutaredoxin 1 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=grxC1 PE=3 SV=1
Q4UKL7	Glutaredoxin 1 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=grxC1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002373 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00462 all species →	Glutaredoxin	Glutaredoxin	Domain	Interproscan
PF04784 all species →	DUF547	Protein of unknown function, DUF547	Family	Interproscan
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014025 all species →	Domain	Glutaredoxin subgroup	Interproscan
IPR051548 all species →	Family	Glutaredoxin-like Electron Transport	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR002109 all species →	Domain	Glutaredoxin	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR006869 all species →	Domain	Domain of unknown function DUF547	Interproscan
IPR011767 all species →	Active_site	Glutaredoxin active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34386 all species →	GLUTAREDOXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0045454 all species →	Biological Process	cell redox homeostasis	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_032229397.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032229397.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

35TPM > 0

16Conditions

3.5Max TPM

1.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	1.66	3.20
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	1.43	2.20
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	0.76	0.93
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.32	1.76
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.41	1.75
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.54	1.61
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	1.58	2.90
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	1.40	2.16
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.63	2.91
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.07	1.84
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.18	1.48
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	2.32	3.48
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	1.12	2.14
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.87	2.60
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.23	2.04
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.40	1.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.20
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	1.79
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.20
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.06
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.03
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.93
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.77
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.56
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.76
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.36
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.85
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.75
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.56
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.91
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.61
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.90
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	1.86
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.16
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.04
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.91
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.98
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.84
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.35
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.48
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.11
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.94
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.48
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	1.78
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	1.70
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.14
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	1.22
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	2.60
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.04
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	1.65
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.20
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.