Genomic Location: NC_064038.1:10063315...10067720
NR annotation: XP_032229863.2, ATP synthase subunit alpha, mitochondrial-like [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC116613484 |
| Transcript |
| rna-XM_032373972.2 |
| Protein |
| XP_032229863.2 |
| UniProt accession | Description |
|---|---|
| P25705 | ATP synthase F(1) complex subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1A PE=1 SV=1 |
| Q03265 | ATP synthase F(1) complex subunit alpha, mitochondrial OS=Mus musculus OX=10090 GN=Atp5f1a PE=1 SV=1 |
| A5A6H5 | ATP synthase F(1) complex subunit alpha, mitochondrial OS=Pan troglodytes OX=9598 GN=ATP5F1A PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003945 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00306 all species → | ATP-synt_ab_C | ATP synthase alpha/beta chain, C terminal domain | Domain | Interproscan |
| PF00006 all species → | ATP-synt_ab | ATP synthase alpha/beta family, nucleotide-binding domain | Domain | Interproscan |
| PF02874 all species → | ATP-synt_ab_N | ATP synthase alpha/beta family, beta-barrel domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000793 all species → | Domain | ATP synthase, alpha subunit, C-terminal | Interproscan |
| IPR038376 all species → | Homologous_superfamily | ATP synthase, alpha subunit, C-terminal domain superfamily | Interproscan |
| IPR036121 all species → | Homologous_superfamily | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily | Interproscan |
| IPR005294 all species → | Family | ATP synthase, F1 complex, alpha subunit | Interproscan |
| IPR023366 all species → | Homologous_superfamily | ATP synthase subunit alpha, N-terminal domain-like superfamily | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR000194 all species → | Domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | Interproscan |
| IPR004100 all species → | Domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain | Interproscan |
| IPR033732 all species → | Domain | ATP synthase, F1 complex, alpha subunit nucleotide-binding domain | Interproscan |
| IPR020003 all species → | Active_site | ATPase, alpha/beta subunit, nucleotide-binding domain, active site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48082 all species → | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015986 all species → | Biological Process | proton motive force-driven ATP synthesis | Interproscan |
| GO:0046034 all species → | Biological Process | ATP metabolic process | Interproscan |
| GO:1902600 all species → | Biological Process | proton transmembrane transport | Interproscan |
| GO:0045261 all species → | Cellular Component | proton-transporting ATP synthase complex, catalytic core F(1) | Interproscan |
| GO:0046933 all species → | Molecular Function | proton-transporting ATP synthase activity, rotational mechanism | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0032559 all species → | Molecular Function | adenyl ribonucleotide binding | Interproscan |
| GO:0005754 all species → | Cellular Component | obsolete mitochondrial proton-transporting ATP synthase, catalytic core | Interproscan |
| GO:0043531 all species → | Molecular Function | ADP binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02132 | ATPeF1A, ATP5A1, ATP1; F-type H+-transporting ATPase subunit alpha | - | Diabetic cardiomyopathy | ko05415 | deepkoala |
Transcript abundance of XP_032229863.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 630.33 | 716.87 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 576.21 | 696.96 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 817.98 | 862.56 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 794.93 | 821.79 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 699.43 | 759.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 3 | 801.24 | 862.81 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 3 | 661.63 | 707.86 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 687.44 | 774.79 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 3 | 694.20 | 727.63 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 720.19 | 779.43 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 752.44 | 791.88 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 3 | 656.77 | 754.95 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 618.69 | 649.65 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 3 | 709.21 | 785.20 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 3 | 806.33 | 842.30 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 3 | 784.01 | 810.60 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
