Gene detail

Detailed information of XP_032229995.2 in Nematostella vectensis

Genomic Location: NC_064044.1:2636284...2694615
NR annotation: XP_032229995.2, E3 ubiquitin-protein ligase UBR5-like isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC116613544

ATGCCAGTTATCCATGTCGCTGTTCATCCTCTACCGGGAACTATCGATGAACTCCATGAAAGGCTCAAGGAAATCGCCGAGTCTAAGGGCAAAACAGGACATTTCAGCCCCACGGTGGTGCAGCTACTTAAAGATTGCACCATCAAACAAAGTGTCATCGGCCCCCAGCATGTGGCTTTCCTCTTAGAGGATGGACAGATCTGCCGCATACCTTTTATGCTAAATGCTGATAAGTTGGACTTGAGTATCAAGGATGTTCCACTGGAGGAAGAACCCCCAAGTTCGTCTGCCCGTTCTGCTGCACATGTAGTGCTTCACTCAGTTGGAGGCTCACGTGGTCAGAGTGATGGCTCCTGGGTGTTGTCGTCAGGGGAGGGGCTTAGTGGATTGACAGGCCATCCAATCAGGTGGGGCTCAGGCCCGGCGGCTGTGTCTTTACGAGCTGCGAGCAGAGCCCCCTCTGCCCGTGGGCGTGGCAGAGTTGTGAGAAGAGGCACGAGAGGGGGCGCTGGCGGCAGTGCCTGGGTACTAGGATCACGCGCTGTTGTACCTGCTTCTGCTGTACCTGAGGAGCTTGTCTCCCAGGCCCAAGTTGTTCTACAGGGTAAATCAAGGGCGGCAATCATTAGAGAACTGCAGAGAACGAATCTTGATGTTAATCTGGCAGTAAATAACTTGCTGAGTCGAGATGAGGAAGATGGTGATGACCAAGAAGAAAGCTCCCAGTACCTTCCTGGAGATGACCTGATGTCCCTCTTGGATGCTGGTGTGCATGTGGAGGACCCATCTCTAATAGTTGATCCGGATGCGATCTTCCCAGAAGACATGCTCTATAGTCATCAGTACAGCACCCTACATCGCCGCAGCTCAGGAGCAGGGCGTGGCAGGCCTGTGGTCGATAGGGACTCCCCTGGTGTTGGATCTGATCGCGAGCGAGATAGGTCAACTAGAGACAGAGAGCCGTTAAGTCGTGAGCAGTTTGACCGGTGGTGGGGTAGTGTACATCTGTGTGGTGACCCAGCTGGGAGGTCGTCAGCCAACAAGATCCCAGCACAAGACAAACCCGTTAACACCGCTAAAGCATCTGCAAGTGATCCTGTCACAGTGGCTGGTCAGCTTCAGTGGTGGCCCAGTATTGACGGAGAATGCCCAAGATTTCAGTACATTGCTGCTATGCACTCAGAGCTTATCGCTGTCGGCGTAGATGGTAGACTCTACCAGTGGCGCTGGCAGGACCCCGCCCCATCTCCAGGCATTGGTGCGGCAGGGACTGTTACCTTTCATCCGCGTGCAAGAGATCTAGCTCTAGCAGAAGAGAAAGTCATTGCTATCGCTGCTTCCTCCATCAGGGCCTCTGTGTTAACAGAATCTGGGAAGGTTGCTAGTTGGATTGATGACTCTCTAGCACATGTTGCAAGCAAGCTTGAGCACTCTGCCCAGAGTTTTCCTGAGCTTGCCAACGATAAAATAATGTCCATTTATGCTTGTGATCTCTATACCTGTGCTCAGACTACATCAGGGGCTCTCTACTGGTGGGGTGTCCTGCCATTTGAGCAGAGAAAAAAGCTGTTAGAAAAAGCTAGAGCACGAGCTCGTCGTAACAGGACCACCTTTACAAGCTGCATAGTTCCTGGAGTCCAAGTGTCCATGAGGAGTTGCCCCCTGTACCACCCTGGTTCAGTTGGGTTCAACATCTCCACGGGAGTACCCAGGGTTGGGACCTTGCTGGAAGCAGCCTGGAATTTGGATGAGAAGTGCCGATTCAAGGTGCAAACTTCAGGCACCCAAGAGATCATGCCCCCTGTTGAAGAGCAGCTGCCGCCGGATCACGACATGCCTGCCATGCTAGGCCTCAAGCGTAAGAAGGATGTGATGTCTGAGTCTGCCATCGACAGATCAGTTGAGGAGTGGGAACTCAAGAATGTCATCTTTGTTGAAGACAAACAAAATATCCCTGTTGGGAAAGTACTTAAGGTTGATGGTGCTTACGCGGCTGTCAGGTTCCCAGTAAAGGATAGCAGTAGTAGTCAACCCACCGCACCGTCTGGGAACCCTGTGGAAGAAGCACAGCTCACAGGACAGCTTCTTCAGCTTCTACAGGAAACTAGACTGCTGCGAAAAGATGAACTACAGTTGGTCAAGTCATCTGCTGCCAATAAGATTCCTGACTGCATTCAGCGCACACCTAAGGCTCTGTCAGTGCCCACAGGGTGTAAGGTCCTATCCCTGACGGTGAACTGCAAGGGGGTTCACGTCCTGCTAAAGACATCTACTGGGGTCCGTTATGCCCTATACAGCCTCGCCTCCAGTAAACCAGAGCCAGGTGGTGGCCTGCCTGCAGACTGTGCGTCTTTCCTTGGCCAGCGAGGTAGCCGAGACATCCAGATGTACTCAACAGGATGTGACTCCCTTATCATGATGACCGACACAAATGGTGCCTTATTTCCCCTCTCAAGGAACTTTCTTGGGACTATCAAAGACCCTTCATGGATTGATCTTCCACCAGTGCAGTGTCTTGGTGTTGGAGTTACATCTCTCCGGCCTGGGCTGGACTGCAAACTGACTGCTGTTGTTGTCATGGTTTTGGAGCCCCAGAAACTCATGTCTTATGTGCTTGCCTGCGACTATGAGGGAATTCAGAAGTTTTTGGACTCCTTGGAAGCTTCATCTGATATTCTTGACACCTCAAGTCTTGTAGAATCAGCCTTACTTGAGCGCTGTGATGGCAACCGCAACATTCTGCACACTTGTATCTCCATGTGTTTCCCGACGTCAGCTCATGAGCCAGGTGACCCTTCCTCAGATCCTCTTACAGGAGGTAGTGCTACCTCTGGTGCTGGCAGTAAGCTAGACTCGATCAAGGGCGTGGTGGATGCCCTTGCCTCAGCTGTGGCTGCTGCCGCTGCTGCGGTCCGGTCAAGCAGCAGCGTGTCTGGCGAGTGCTACCTTGCGGACTCTGTCCATGACACCCCATCGTCATCTGCGGCTGGCGCCTCTCAAAGCACCCCACCTGTAAGTAGGGCTGGAGTCAGAGAAGTGATGCAGCGAGCCTTTTCCTTGGGACTGTCTTCTTCAGGAAGGCTTGAGGGCGATGATGATGCACCTATCCCTACCCTACACTGGCCACCTGACCCGCCAGGCGACTGTAGAGCGACCATCCAGCGCATATCTCAACAAGTGGAAGACTCGAACAGTGAAGAGCTCCCACCTCTTGCCTCCTCCACGCCTGCTGGGCCGTCATCTGCAAGCACAGAGGAGCCTCTTACCAAACAGGCAAAGGCTCTGAAATGCTTGCGTCTACTGTGTGACAGTAAAGCACTTGCTCCATTCCTGCTCCAGCTCCTGTCTGCAAAGGACGCAAATGGAGGGACTCCATTTATGGCAGCAGTTAAGGGACGTGCTTACCAGGCCGCACTCTGCCTGTTTACCACAGCCCAACGGCTTGCCACGGGAGCTGATGGAGTGGTGGACAAGGAGATTCTGATGACGATGGTGTTCCCTTCTGACGGACATCCTGACTCCTCTCCCCTGCAGGTCCTCTGCTGCAATGACACGTGCTCCTTCACATGGACTGGGACCGAGCACATAAACCAGGACATCTTTGAGTGCCGCACGTGTGGCCTGACGGGCTCCCTGTGCTGCTGCACGGAATGTGCGCGAGTTTGCCATCGTGGTCATGACTGCAAGCTGAAGCGTACATCACCCACAGCTTACTGTGATTGTTGGGAAAAATGCAAATGCCGAGCCCTCATCCCAGGCTCCCAAGTGGCGCGGTCACAACTCCTTAGCAGGTTGATCAGCGACACAGACCTTGTGACCAGGCCTAATGCAAGGGGCGAGCACCTTCTGCTGTTCTTGGTCCAGACTGTATCTCGACAAGCCGTAGAACAGAGGCAACATCACCCCCACCGAGCCAATGACACACGCCCCAAGACCAAGAGCAAGACTATTGGTACATGCGCTACCACTAACCCCCTGCCCGACCATGATCTCGACCCACCGCGATTCGCTCGTACAGCATTGGAGCTGATCATGCAGGACTGGCGCGCGGTCAAGGCTATGATCATGGATGGCTGCTGCGATGTTACTAGACATGCGGCAGAGGGTCACCCAGACGCCTCCTCTGCATACATGCTCACTGGGGAGGAGCAAGAAGAACATTTGTCCGAGCAAGATAGAGCTGTCCGGCTGGATGCCTTCACTCACTTCCTGATCGCCAAGTGCACCTCTGAGATGCTGGACTATCTGCTCGCCACACTGGTCTCTGCTGTCAAGTCTTCGACAGACCCAAACAATTCTGAAGAAGCTCGGATTGCTAAACGATTTATACGATCGGTAGCCCGAGTCTTTGTAGTCAGAGCCTCCGAGATGCCTCCGTCTACTGTAAAGAGAAGACCGAGCTTCATGCAGCCGCTGGCCAAGTGCAGACTTGTATTCCATACTCTCAACACTCTGGCGGTCCCTGAGCTGGTGAAAACAGCTGACTCATTGTTAGCCCCAGTCCGCCTGGGCGTGTGTCGTCCCTCCCAGCCCTTCTCCCTCATAACGTCAAACATCGAGGCCACTCAGGCGAGCGAGGAGCTCTTCTCTGTGGAACCTTTGCCTCTCAAGTCTCCATCTTCTGCCACTAGTGAGGACGCAGACCCCCATGAGCGGCCCTCCACCCATAGGCACAGGGGCACTAGACACCGCCGCCGCCAGGCACGCCTTGTAGGGCAGGAGCATGCTGCTGCTAGCAGTGTGTCCCATCATGCACCTGGCGGGGGTGCTGTGGTGGATGCCGATGATGTGGAGGAGGAGGCAGCGGACGACGAGCTGGGTAGCGGGGCTGCTGGTAATGAATCAGACATGGACCTCGATCTTTTGGCTGAGAGTGACAGCGACAGTGATGATAGCAATGTTGGAGAAACCGAACGCCGCAGTCGTGTCCCAGGCTCCCTCATTGGCTCTGACAGTGCAAGCCAGGGTGACCATGGGGACTTTTACAGCGAGGAGGAGTCATCCACTGGGGAAGATGAGGAAGAGGAAGAAGAAGATGATGCAGAAATGCATGATAGGGATGACAACGATGGTGGGCAGGAGAACATGGTGGAGGTACCTAGTCGAGCAGCGGCTGCAACAGCCTCTGAGCCCTCCCGGTCCTCCCCTCATGTTATGCAGTGGGCGATCCGCCCCAACCAGCCCCGCAGTACGGGAACTAGCCTGGCTACTGCCCAGACCTCCAATGCATCAGGGTTTATCTATATGGACTCAGGGACACTGCGGCGGACTGGCGCAAGCAATGGGGCATCGGCAGCAACTGGGGCCAATGACCTGACTGGGACGCCAACAACTGATCGCATGGGGAACTCCACCAGTGCGCTTGCGAGAGCATTTGGCATTGTTGTTCGAGAGATAACGGACCTCCTACGTAACGCCAACCCTCAGTCCACACTACCACCCACATTCCTTACCCCAACCCCAGCCACTGTTCGAGAGTGCTGTAGCCTGGTGGACTGGGGGCTGCAGCCTTGCTGGGAGTGGATGGAGACTGTGTTAGACTGCACCGAGTCTCAGCTGAGGTTTGGACTCTCCCTGTCTGCCGCTACCGACTCCACTCACCCGTCTCACCCCCTACATGATCCACACCCAAAGACCGCCTCCAAGGACCGGCGAGTAAGGGAGGACGCAGCCATCCTCAGGTCCTGGGAGAGTAAGAGGCGAAGACGTCAAGTGACGCCAAGTGTGAGTACCCCGGATGCTGGTCGCCAGGACTTCCTCCAGTATGTGCTGTCGCTGCTACGGGGCCAGTGTAACGAACATGGAGACACGCTGCCTAAACTAGACGTGTCTGCCCTCCGTCATGTTGCATATGTCCTGGACGCGCTGATCTACTACCTGCGCAACAACCCCCAGGCCATGTCACAGTGGAACGTCTCCAGTGCCTCTCCACCCACTTCCATCACATGTACAAGCAGTGTTGTCCCGGAAGTGGGAGAACCGGACGAGGAAGGGAGTGAGGATATCGAGGATGAGGATTGCTCGCGGAGAGATGACGAGTACGACGATGACACGGAGGCTGTGGAAGACGAGCCCATGCCGACACCGCCTCCTCCTGGATCCCTGCACAGGTATTTCGTGCGTACGGATTCCACCACTGTGCTTGGATGTGAGCCGCCTGACCCGTTTAACACACCACTGGAGGAGGCGTTACCCCTGGCGTGCCAGCCACACCTGCTCCATCCTAATGCGCGCAGGGAGCAGCTGTTTGGCGCAGGCCAGGATCGCCACAAAGGCAAGCAAGCGTCACGCACTATGGCCCTGTCACGGCCTGACGTGACGGTCACGCAAGCAGGTGTGACAGAGAAGAGTGATGGTGCGGGGGATACAGAAATGAGAGATAAGGAAGCACAAGCCTCTACGTCCGCTAGTGCCCAAGCCTCCACTTCCGCCAGTACTCAGACCACCACGTCGCCTACCCAGTCCCCCTCGTCAGCTAGTGCCCAGCCCTCGTCGTCCATTCATGGCGGCACGTCAGCCAACTCGTTACTAGGCCGGTGGCGCCTGTGCGTGGAGCTCTTTGGCCGAGTGTTCCTTGAGGACGTTGGGTCCGAGCCTTCTTCTGTTCTTGGTGAGCTCGGCAGATTTGACGTGAATGAGACCAAGTTCAGGCGGGAAATGGAGAGACTGAGAAACTCAGCCCAACGTGACATGAATATAGAGGTTGAGCGAGGTCGCGCCACCATCATCCAGCAGTCGTTCCGTCAGCTCAATAATCAGTTCGGCCGCCGTGGCCCAAGGTCACGTCCAATGACCATCCACCGGGTAAAAGTCTCCTTCAAGGACGAGCAGGGGGAGGGGAGCGGAGTGGCGCGTAGCTTCTACACGGCGCTCAGCGAAGCTCTGCTATCAGGAGAAAAACTGCCGCCCCTGGACACGTGTCATAAAGGTACAGTCCAGCGTCTACGCCGCGCCCTGTCCTCCTACCGACACAAGCGCCGTGACCACCGTGACAGGGAGTCACGCCGCACGCTGTCTGCAGATGCCAGGCCATTCTACTGTAGCGGCACACCTAGCACTGATGGGGATGACACGGATGGTGACCCCCTACCCTACCACCGCCAGTCGCTAGGCGAGAGATTGTACCCCCGCGTACATGCCCTTAAACCGGCTCTCGCCAGCAGGATCACGGGGATGCTGTTAGAGCTGTCACCAGCTCAGCTCCTCCTCCTCCTCGCCAGTGAGGACACCCTGGTTCAGCGCGTGGACGAGGCTGTTGACGTCATCAACGAAGCCAAGAATTTAAGCAAAGAGCCTGCGGAGGAAGAGTCCGTGGCTTCTGCCCCGGTCAGTGAGCAAGAGGAGTCCGCTGAGGAGCACACCCCGCTTTTCTATCAGCCTGGCAAGGCGGGCTACTACTCGCCCAGACCCGGCCAGTACACGGACGACCGGCTCAACTGCTACAGGAACGTTGGAAGGATTATCGGCCTTTGTTTACTCCAGAACGAGCTGTGCACGCTGACATTCAACAGACATGTTATCAAGTTTATCCTCGGACGGCGGGTCGGATGGCACGACTTAGCGTTCTTCGATCCCGTCCTATACGAGAGCTTACGACACTTGCTAGCGCTCGCTGAGTCACCGGACGCGGAGCAGAAATTCCACACTCTCGACCTGACCTTCAACATCCACCTGACACCTGAGGAAGGGGGGGCACTTGTCGACCTGATGAGGGGGGGGAAGGACGTGGCGGTGACGGCATCCAACGTTCAGGAGTACGTGCGCCTGTACGCAGACTATCGGATGGTCACTAGCACCAAGAGGGCCTTACAGAGCATGCGTGAAGGTGTACTGGATGTGATCCCATCGTCTTCGCTTGAGTGTCTTACGGCCGAGGACTTCCGGTTGCTGCTAAACGGCTGCGGCGAGATAAGTGTACAACAACTGATGTCCTATACCTCTTTCAACGACGAGACTGGCGGAGCTGGCGCAGAAAAGCTGTTAAAGTTCAAAAAGTGGTTCTGGTCCATCGTTGAGAAGATGAGCAACACCGAGAGACAAGACTTGGTGTATTTCTGGACGTCCAGTCCCGCGCTGCCAGCCAGCGAGGAGGGTTTCCAGCCCAAGCCATCCGTCACCGTCAAACCTGCGCATGACCACCAGCTGCCGACCGCTAACACGTGTATCAGCAGGCTCTACATGCCGCTGTACTCATCGCGGGCTATCCTAAAGAGCAAGCTTCTCCTTGCTATCAAGACCAAGACATTTGGCTTTGTCTAG

Transcript

rna-XM_032374104.2

ATGGTCAGCTGTCTACCCCCACCGTACCATGCGTATCTTAATAGAGCGGTAAAGAAGAAAGTCAAAGTTGTGTTCTTCGCTCTTGTAAGGCTTTCTTCAAGTGTTCGCTTTAAATGAAATGCTGCTTATAGCCTTCAAATAATACAGAAGTAGCCACAGGATGCCAGTTATCCATGTCGCTGTTCATCCTCTACCGGGAACTATCGATGAACTCCATGAAAGgCTCAAGGAAATCGCCGAGTCTAAGGGCAAAACAGGACATTTCAGCCCCACGGTGGTGCAGCTACTTAAAGATTGCACCATCAAACAAAGTGTCATCGGCCCCCAGCATGTGGCTTTCCTCTTAGAGGATGGACAGATCTGCCGCATACCTTTTATGCTAAATGCTGATAAGTTGGACTTGAGTATCAAGGATGTTCCACTGGAGGAAGAACCCCCAAGTTCGTCTGCCCGTTCTGCTGCACATGTAGTGCTTCACTCAGTTGGAGGCTCACGTGGTCAGAGTGATGGCTCCTGGGTGTTGTCGTCAGGGGAGGGGCTTAGTGGATTGACAGGCCATCCAATCAGGTGGGGCTCAGGCCCGGCGGCTGTGTCTTTACGAGCTGCGAGCAGAGCCCCCTCTGCCCGTGGGCGTGGCAGAGTTGTGAGAAGAGGCACGAGAGGGGGCGCTGGCGGCAGTGCCTGGGTACTAGGATCACGCGCTGTTGTACCTGCTTCTGCTGTACCTGAGGAGCTTGTCTCCCAGGCCCAAGTTGTTCTACAGGGTAAATCAAGGGCGGCAATCATTAGAGAACTGCAGAGAACGAATCTTGATGTTAATCTGGCAGTAAATAACTTGCTGAGTCGAGATGAGGAAGATGGTGATGACCAAGAAGAAAGCTCCCAGTACCTTCCTGGAGATGACCTGATGTCCCTCTTGGATGCTGGTGTGCATGTGGAGGACCCATCTCTAATAGTTGATCCGGATGCGATCTTCCCAGAAGACATGCTCTATAGTCATCAGTACAGCACCCTACATCGCCGCAGCTCAGGAGCAGGGCGTGGCAGGCCTGTGGTCGATAGGGACTCCCCTGGTGTTGGATCTGATCGCGAGCGAGATAGGTCAACTAGAGACAGAGAGCCGTTAAGTCGTGAGCAGTTTGACCGGTGGTGGGGTAGTGTACATCTGTGTGGTGACCCAGCTGGGAGGTCGTCAGCCAACAAGATCCCAGCACAAGACAAACCCGTTAACACCGCTAAAGCATCTGCAAGTGATCCTGTCACAGTGGCTGGTCAGCTTCAGTGGTGGCCCAGTATTGACGGAGAATGCCCAAGATTTCAGTACATTGCTGCTATGCACTCAGAGCTTATCGCTGTCGGCGTAGATGGTAGACTCTACCAGTGGCGCTGGCAGGACCCCGCCCCATCTCCAGGCATTGGTGCGGCAGGGACTGTTACCTTTCATCCGCGTGCAAGAGATCTAGCTCTAGCAGAAGAGAAAGTCATTGCTATCGCTGCTTCCTCCATCAGGGCCTCTGTGTTAACAGAATCTGGGAAGGTTGCTAGTTGGATTGATGACTCTCTAGCACATGTTGCAAGCAAGCTTGAGCACTCTGCCCAGAGTTTTCCTGAGCTTGCCAACGATAAAATAATGTCCATTTATGCTTGTGATCTCTATACCTGTGCTCAGACTACATCAGGGGCTCTCTACTGGTGGGGTGTCCTGCCATTTGAGCAGAGAAAAAAGCTGTTAGAAAAAGCTAGAGCACGAGCTCGTCGTAACAGGACCACCTTTACAAGCTGCATAGTTCCTGGAGTCCAAGTGTCCATGAGGAGTTGCCCCCTGTACCACCCTGGTTCAGTTGGGTTCAACATCTCCACGGGAGTACCCAGGGTTGGGACCTTGCTGGAAGCAGCCTGGAATTTGGATGAGAAGTGCCGATTCAAGGTGCAAACTTCAGGCACCCAAGAGATCATGCCCCCTGTTGAAGAGCAGCTGCCGCCGGATCACGACATGCCTGCCATGCTAGGCCTCAAGCGTAAGAAGGATGTGATGTCTGAGTCTGCCATCGACAGATCAGTTGAGGAGTGGGAACTCAAGAATGTCATCTTTGTTGaagacaaacaaaatatccCTGTTGGGAAAGTACTTAAGGTTGATGGTGCTTACGCGGCTGTCAGGTTCCCAGTAAAGGATAGCAGTAGTAGTCAACCCACCGCACCGTCTGGGAACCCTGTGGAAGAAGCACAGCTCACAGGACAGCTTCTTCAGCTTCTACAGGAAACTAGACTGCTGCGAAAAGATGAACTACAGTTGGTCAAGTCATCTGCTGCCAATAAGATTCCTGACTGCATTCAGCGCACACCTAAGGCTCTGTCAGTGCCCACAGGGTGTAAGGTCCTATCCCTGACGGTGAACTGCAAGGGGGTTCACGTCCTGCTAAAGACATCTACTGGGGTCCGTTATGCCCTATACAGCCTCGCCTCCAGTAAACCAGAGCCAGGTGGTGGCCTGCCTGCAGACTGTGCGTCTTTCCTTGGCCAGCGAGGTAGCCGAGACATCCAGATGTACTCAACAGGATGTGACTCCCTTATCATGATGACCGACACAAATGGTGCCTTATTTCCCCTCTCAAGGAACTTTCTTGGGACTATCAAAGACCCTTCATGGATTgatcTTCCACCAGTGCAGTGTCTTGGTGTTGGAGTTACATCTCTCCGGCCTGGGCTGGACTGCAAACTGACTGCTGTTGTTGTCATGGTTTTGGAGCCCCAGAAACTCATGTCTTATGTGCTTGCCTGCGACTATGAGGGAATTCAGAAGTTTTTGGACTCCTTGGAAGCTTCATCTGATATTCTTGACACCTCAAGTCTTGTAGAATCAGCCTTACTTGAGCGCTGTGATGGCAACCGCAACATTCTGCACACTTGTATCTCCATGTGTTTCCCGACGTCAGCTCATGAGCCAGGTGACCCTTCCTCAGATCCTCTTACAGGAGGTAGTGCTACCTCTGGTGCTGGCAGTAAGCTAGACTCGATCAAGGGCGTGGTGGATGCCCTTGCCTCAGCTGTGGCTGCTGCCGCTGCTGCGGTCCGGTCAAGCAGCAGCGTGTCTGGCGAGTGCTACCTTGCGGACTCTGTCCATGACACCCCATCGTCATCTGCGGCTGGCGCCTCTCAAAGCACCCCACCTGTAAGTAGGGCTGGAGTCAGAGAAGTGATGCAGCGAGCCTTTTCCTTGGGACTGTCTTCTTCAGGAAGGCTTGAGGGCGATGATGATGCACCTATCCCTACCCTACACTGGCCACCTGACCCGCCAGGCGACTGTAGAGCGACCATCCAGCGCATATCTCAACAAGTGGAAGACTCGAACAGTGAAGAGCTCCCACCTCTTGCCTCCTCCACGCCTGCTGGGCCGTCATCTGCAAGCACAGAGGAGCCTCTTACCAAACAGGCAAAGGCTCTGAAATGCTTGCGTCTACTGTGTGACAGTAAAGCACTTGCTCCATTCCTGCTCCAGCTCCTGTCTGCAAAGGACGCAAATGGAGGGACTCCATTTATGGCAGCAGTTAAGGGACGTGCTTACCAGGCCGCACTCTGCCTGTTTACCACAGCCCAACGGCTTGCCACGGGAGCTGATGGAGTGGTGGACAAGGAGATTCTGATGACGATGGTGTTCCCTTCTGACGGACATCCTGACTCCTCTCCCCTGCAGGTCCTCTGCTGCAATGACACGTGCTCCTTCACATGGACTGGGACCGAGCACATAAACCAGGACATCTTTGAGTGCCGCACGTGTGGCCTGACGGGCTCCCTGTGCTGCTGCACGGAAtgtgcgcgagtttgccatcGTGGTCATGACTGCAAGCTGAAGCGTACATCACCCACAGCTTACTGTGATTGTTGGGAAAAATGCAAATGCCGAGCCCTCATCCCAGGCTCCCAAGTGGCGCGGTCACAACTCCTTAGCAGGTTGATCAGCGACACAGACCTTGTGACCAGGCCTAATGCAAGGGGCGAGCACCTTCTGCTGTTCTTGGTCCAGACTGTATCTCGACAAGCCGTAGAACAGAGGCAACATCACCCCCACCGAGCCAATGACACACGCCCCAAGACCAAGAGCAAGACTATTGGTACATGCGCTACCACTAACCCCCTGCCCGACCATGATCTCGACCCACCGCGATTCGCTCGTACAGCATTGGAGCTGATCATGCAGGACTGGCGCGCGGTCAAGGCTATGATCATGGATGGCTGCTGCGATGTTACTAGACATGCGGCAGAGGGTCACCCAGACGCCTCCTCTGCATACATGCTCACTGGGGAGGAGCAAGAAGAACATTTGTCCGAGCAAGATAGAGCTGTCCGGCTGGATGCCTTCACTCACTTCCTGATCGCCAAGTGCACCTCTGAGATGCTGGACTATCTGCTCGCCACACTGGTCTCTGCTGTCAAGTCTTCGACAGACCCAAACAATTCTGAAGAAGCTCGGATTGCTAAACGATTTATACGATCGGTAGCCCGAGTCTTTGTAGTCAGAGCCTCCGAGATGCCTCCGTCTACTGTAAAGAGAAGACCGAGCTTCATGCAGCCGCTGGCCAAGTGCAGACTTGTATTCCATACTCTCAACACTCTGGCGGTCCCTGAGCTGGTGAAAACAGCTGACTCATTGTTAGCCCCAGTCCGCCTGGGCGTGTGTCGTCCCTCCCAGCCCTTCTCCCTCATAACGTCAAACATCGAGGCCACTCAGGCGAGCGAGGAGCTCTTCTCTGTGGAACCTTTGCCTCTCAAGTCTCCATCTTCTGCCACTAGTGAGGACGCAGACCCCCATGAGCGGCCCTCCACCCATAGGCACAGGGGCACTAGACACCGCCGCCGCCAGGCACGCCTTGTAGGGCAGGAGCATGCTGCTGCTAGCAGTGTGTCCCATCATGCACCTGGCGGGGGTGCTGTGGTGGATGCCGATGATGTGGAGGAGGAGGCAGCGGACGACGAGCTGGGTAGCGGGGCTGCTGGTAATGAATCAGACATGGACCTCGATCTTTTGGCTGAGAGTGACAGCGACAGTGATGATAGCAATGTTGGAGAAACCGAACGCCGCAGTCGTGTCCCAGGCTCCCTCATTGGCTCTGACAGTGCAAGCCAGGGTGACCATGGGGACTTTTACAGCGAGGAGGAGTCATCCACTGGGGAAGAtgaggaagaggaagaagaagatGATGCAGAAATGCATGATAGGGATGACAACGATGGTGGGCAGGAGAACATGGTGGAGGTACCTAGTCGAGCAGCGGCTGCAACAGCCTCTGAGCCCTCCCGGTCCTCCCCTCATGTTATGCAGTGGGCGATCCGCCCCAACCAGCCCCGCAGTACGGGAACTAGCCTGGCTACTGCCCAGACCTCCAATGCATCAGGGTTTATCTATATGGACTCAGGGACACTGCGGCGGACTGGCGCAAGCAATGGGGCATCGGCAGCAACTGGGGCCAATGACCTGACTGGGACGCCAACAACTGATCGCATGGGGAACTCCACCAGTGCGCTTGCGAGAGCATTTGGCATTGTTGTTCGAGAGATAACGGACCTCCTACGTAACGCCAACCCTCAGTCCACACTACCACCCACATTCCTTACCCCAACCCCAGCCACTGTTCGAGAGTGCTGTAGCCTGGTGGACTGGGGGCTGCAGCCTTGCTGGGAGTGGATGGAGACTGTGTTAGACTGCACCGAGTCTCAGCTGAGGTTTGGACTCTCCCTGTCTGCCGCTACCGACTCCACTCACCCGTCTCACCCCCTACATGATCCACACCCAAAGACCGCCTCCAAGGACCGGCGAGTAAGGGAGGACGCAGCCATCCTCAGGTCCTGGGAGAGTAAGAGGCGAAGACGTCAAGTGACGCCAAGTGTGAGTACCCCGGATGCTGGTCGCCAGGACTTCCTCCAGTATGTGCTGTCGCTGCTACGGGGCCAGTGTAACGAACATGGAGACACGCTGCCTAAACTAGACGTGTCTGCCCTCCGTCATGTTGCATATGTCCTGGACGCGCTGATCTACTACCTGCGCAACAACCCCCAGGCCATGTCACAGTGGAACGTCTCCAGTGCCTCTCCACCCACTTCCATCACATGTACAAGCAGTGTTGTCCCGGAAGTGGGAGAACCGGACGAGGAAGGGAGTGAGGATATCGAGGATGAGGATTGCTCGCGGAGAGATGACGAGTACGACGATGACACGGAGGCTGTGGAAGACGAGCCCATGCCGACACCGCCTCCTCCTGGATCCCTGCACAGGTATTTCGTGCGTACGGATTCCACCACTGTGCTTGGATGTGAGCCGCCTGACCCGTTTAACACACCACTGGAGGAGGCGTTACCCCTGGCGTGCCAGCCACACCTGCTCCATCCTAATGCGCGCAGGGAGCAGCTGTTTGGCGCAGGCCAGGATCGCCACAAAGGCAAGCAAGCGTCACGCACTATGGCCCTGTCACGGCCTGACGTGACGGTCACGCAAGCAGGTGTGACAGAGAAGAGTGATGGTGCGGGGGATACAGAAATGAGAGATAAGGAAGCACAAGCCTCTACGTCCGCTAGTGCCCAAGCCTCCACTTCCGCCAGTACTCAGACCACCACGTCGCCTACCCAGTCCCCCTCGTCAGCTAGTGCCCAGCCCTCGTCGTCCATTCATGGCGGCACGTCAGCCAACTCGTTACTAGGCCGGTGGCGCCTGTGCGTGGAGCTCTTTGGCCGAGTGTTCCTTGAGGACGTTGGGTCCGAGCCTTCTTCTGTTCTTGGTGAGCTCGGCAGATTTGACGTGAATGAGACCAAGTTCAGGCGGGAAATGGAGAGACTGAGAAACTCAGCCCAACGTGACATGAATATAGAGGTTGAGCGAGGTCGCGCCACCATCATCCAGCAGTCGTTCCGTCAGCTCAATAATCAGTTCGGCCGCCGTGGCCCAAGGTCACGTCCAATGACCATCCACCGGGTAAAAGTCTCCTTCAAGGACgagcagggggaggggagcgGAGTGGCGCGTAGCTTCTACACGGCGCTCAGCGAAGCTCTGCTATCAGGAGAAAAACTGCCGCCCCTGGACACGTGTCATAAAGGTACAGTCCAGCGTCTACGCCGCGCCCTGTCCTCCTACCGACACAAGCGCCGTGACCACCGTGACAGGGAGTCACGCCGCACGCTGTCTGCAGATGCCAGGCCATTCTACTGTAGCGGCACACCTAGCACTGATGGGGATGACACGGATGGTGACCCCCTACCCTACCACCGCCAGTCGCTAGGCGAGAGATTGTACCCCCGCGTACATGCCCTTAAACCGGCTCTCGCCAGCAGGATCACGGGGATGCTGTTAGAGCTGTCACCAGCTCagctcctcctcctcctcgccAGTGAGGACACCCTGGTTCAGCGCGTGGACGAGGCTGTTGACGTCATCAACGAAGCCAAGAATTTAAGCAAAGAGCCTGCGGAGGAAGAGTCCGTGGCTTCTGCCCCGGTCAGTGAGCAAGAGGAGTCCGCTGAGGAGCACACCCCGCTTTTCTATCAGCCTGGCAAGGCGGGCTACTACTCGCCCAGACCCGGCCAGTACACGGACGACCGGCTCAACTGCTACAGGAACGTTGGAAGGATTATCGGCCTTTGTTTACTCCAGAACGAGCTGTGCACGCTGACATTCAACAGACATGTTATCAAGTTTATCCTCGGACGGCGGGTCGGATGGCACGACTTAGCGTTCTTCGATCCCGTCCTATACGAGAGCTTACGACACTTGCTAGCGCTCGCTGAGTCACCGGACGCGGAGCAGAAATTCCACACTCTCGACCTGACCTTCAACATCCACCTGACACCTGAGGAAGGGGGGGCACTTGTCGACCTGATGAGGGGGGGGAAGGACGTGGCGGTGACGGCATCCAACGTTCAGGAGTACGTGCGCCTGTACGCAGACTATCGGATGGTCACTAGCACCAAGAGGGCCTTACAGAGCATGCGTGAAGGTGTACTGGATGTGATCCCATCGTCTTCGCTTGAGTGTCTTACGGCCGAGGACTTCCGGTTGCTGCTAAACGGCTGCGGCGAGATAAGTGTACAACAACTGATGTCCTATACCTCTTTCAACGACGAGACTGGCGGAGCTGGCGCAGAAAAGCTGTTAAAGTTCAAAAAGTGGTTCTGGTCCATCGTTGAGAAGATGAGCAACACCGAGAGACAAGACTTGGTGTATTTCTGGACGTCCAGTCCCGCGCTGCCAGCCAGCGAGGAGGGTTTCCAGCCCAAGCCATCCGTCACCGTCAAACCTGCGCATGACCACCAGCTGCCGACCGCTAACACGTGTATCAGCAGGCTCTACATGCCGCTGTACTCATCGCGGGCTATCCTAAAGAGCAAGCTTCTCCTTGCTATCAAGACCAAGACATTTGGCTTTGTCTAGACTGCCAGGGAACTCCGCTGACCAGACACCCAAGTAAGGTCAGTGCCAGCTGACCAAAAGAATGGGCTCAAGCCAATCCGCTGACCAGATTGGTGCCCGACGAGGTTCTAAGCCGATTCGTTGAGATTTGTTTATCAATCTTAAAAGACGCTTGAAGAAGTTCGCGTTATGTTTACTCGCTATGGCGACCAGAGACTAGAAACAAAACTAGAAACCTGCCCGTGAAGCTTCAAAAGATCGGAGTGAAGACTATCGACAAGTTACCGAAACGATCTCGGGAACCCGAGCGACCGCCGATATGCTTACGAATGCTTATTGACACAAAGACAAGCAACGTTTCTGTTCTGTGTGTAAATTGAATAAACTCATTTTGTATGATCTCCCTCTTGCGTAAGGTTGTGCTACGCGTTCTTTCCAAGATTATTTTTTGCACAACATTTGTTGCACGGAACACAAAtggttgtttgttgttgttgttgtttttttttcttttttcctggAAACTCTGAGACATGAAATATGGCTCTCCGCCTTTTTTACTCGACGCTCTTGAGCCGGTAAGGGGTATGTACATTTTTCTAGAAAATATTCTAAACCTGTGACAAATGTATACTCCCTTTTGATGGTTTTCgtgattattttttattgcaaaCTTATGTATACTAAAGTATAATGTTAAATAGTATAATGTCTAAACTATGCTGATTTAAGTGCttgattttttattatttttcccgCTTATGGCGGATCTAGAATATTTCATGGGGTGGTTCGATTTATCGAAACCATGAAAGCTTTCCAAGTCCCATCATTTTGCTTATAAGGCTTTGTTCTTTTAAACCAACGTAACCACCCCTGGATCCGCCACTGTTTCTATTAATTTACTATTAAAATTAATTACTATTGAAAATGGAAGGCCACTTGAATAAACTCTCTGGAAAGGTTTAAGTTTAGAATACTTTAACATATGAGCTAGTCACCTCTACGCATTCGATCTGACCTCCTGTCACGCACACCAAGGGCATACCTCACAGTCCATAACGACTGCACACCTTTGTAACAGGTCTCGTGAGTAATGATTCCCTTATGCCATAGCAAGATGCATAGTCTGAAGGGGGGAATGGGGATAGACTAGATGGTGATACCTAGCATCCAAGCGGATGAATTGAGATACGTATAACAGGGTCGGATCTAGGGGCCCCGGCTCCTTTTTCTGTAATTTGGCTcgaaaataacaagaaatataacgAAATCCACGGAAGAACAATGGGTCCCCCCACAGTTTTCTCGAAACCGGTGCTtcgccccctcccctccctttgGATCTCCTGGGTCCCTCCCCCCCGTTTAATTACAATAATATGAAATATAATATGTTATATTATATGCAGTCtgtaaaggtaaaaaaaacatcctaaagataataaatatttctaaaaata

Protein

XP_032229995.2

MPVIHVAVHPLPGTIDELHERLKEIAESKGKTGHFSPTVVQLLKDCTIKQSVIGPQHVAFLLEDGQICRIPFMLNADKLDLSIKDVPLEEEPPSSSARSAAHVVLHSVGGSRGQSDGSWVLSSGEGLSGLTGHPIRWGSGPAAVSLRAASRAPSARGRGRVVRRGTRGGAGGSAWVLGSRAVVPASAVPEELVSQAQVVLQGKSRAAIIRELQRTNLDVNLAVNNLLSRDEEDGDDQEESSQYLPGDDLMSLLDAGVHVEDPSLIVDPDAIFPEDMLYSHQYSTLHRRSSGAGRGRPVVDRDSPGVGSDRERDRSTRDREPLSREQFDRWWGSVHLCGDPAGRSSANKIPAQDKPVNTAKASASDPVTVAGQLQWWPSIDGECPRFQYIAAMHSELIAVGVDGRLYQWRWQDPAPSPGIGAAGTVTFHPRARDLALAEEKVIAIAASSIRASVLTESGKVASWIDDSLAHVASKLEHSAQSFPELANDKIMSIYACDLYTCAQTTSGALYWWGVLPFEQRKKLLEKARARARRNRTTFTSCIVPGVQVSMRSCPLYHPGSVGFNISTGVPRVGTLLEAAWNLDEKCRFKVQTSGTQEIMPPVEEQLPPDHDMPAMLGLKRKKDVMSESAIDRSVEEWELKNVIFVEDKQNIPVGKVLKVDGAYAAVRFPVKDSSSSQPTAPSGNPVEEAQLTGQLLQLLQETRLLRKDELQLVKSSAANKIPDCIQRTPKALSVPTGCKVLSLTVNCKGVHVLLKTSTGVRYALYSLASSKPEPGGGLPADCASFLGQRGSRDIQMYSTGCDSLIMMTDTNGALFPLSRNFLGTIKDPSWIDLPPVQCLGVGVTSLRPGLDCKLTAVVVMVLEPQKLMSYVLACDYEGIQKFLDSLEASSDILDTSSLVESALLERCDGNRNILHTCISMCFPTSAHEPGDPSSDPLTGGSATSGAGSKLDSIKGVVDALASAVAAAAAAVRSSSSVSGECYLADSVHDTPSSSAAGASQSTPPVSRAGVREVMQRAFSLGLSSSGRLEGDDDAPIPTLHWPPDPPGDCRATIQRISQQVEDSNSEELPPLASSTPAGPSSASTEEPLTKQAKALKCLRLLCDSKALAPFLLQLLSAKDANGGTPFMAAVKGRAYQAALCLFTTAQRLATGADGVVDKEILMTMVFPSDGHPDSSPLQVLCCNDTCSFTWTGTEHINQDIFECRTCGLTGSLCCCTECARVCHRGHDCKLKRTSPTAYCDCWEKCKCRALIPGSQVARSQLLSRLISDTDLVTRPNARGEHLLLFLVQTVSRQAVEQRQHHPHRANDTRPKTKSKTIGTCATTNPLPDHDLDPPRFARTALELIMQDWRAVKAMIMDGCCDVTRHAAEGHPDASSAYMLTGEEQEEHLSEQDRAVRLDAFTHFLIAKCTSEMLDYLLATLVSAVKSSTDPNNSEEARIAKRFIRSVARVFVVRASEMPPSTVKRRPSFMQPLAKCRLVFHTLNTLAVPELVKTADSLLAPVRLGVCRPSQPFSLITSNIEATQASEELFSVEPLPLKSPSSATSEDADPHERPSTHRHRGTRHRRRQARLVGQEHAAASSVSHHAPGGGAVVDADDVEEEAADDELGSGAAGNESDMDLDLLAESDSDSDDSNVGETERRSRVPGSLIGSDSASQGDHGDFYSEEESSTGEDEEEEEEDDAEMHDRDDNDGGQENMVEVPSRAAAATASEPSRSSPHVMQWAIRPNQPRSTGTSLATAQTSNASGFIYMDSGTLRRTGASNGASAATGANDLTGTPTTDRMGNSTSALARAFGIVVREITDLLRNANPQSTLPPTFLTPTPATVRECCSLVDWGLQPCWEWMETVLDCTESQLRFGLSLSAATDSTHPSHPLHDPHPKTASKDRRVREDAAILRSWESKRRRRQVTPSVSTPDAGRQDFLQYVLSLLRGQCNEHGDTLPKLDVSALRHVAYVLDALIYYLRNNPQAMSQWNVSSASPPTSITCTSSVVPEVGEPDEEGSEDIEDEDCSRRDDEYDDDTEAVEDEPMPTPPPPGSLHRYFVRTDSTTVLGCEPPDPFNTPLEEALPLACQPHLLHPNARREQLFGAGQDRHKGKQASRTMALSRPDVTVTQAGVTEKSDGAGDTEMRDKEAQASTSASAQASTSASTQTTTSPTQSPSSASAQPSSSIHGGTSANSLLGRWRLCVELFGRVFLEDVGSEPSSVLGELGRFDVNETKFRREMERLRNSAQRDMNIEVERGRATIIQQSFRQLNNQFGRRGPRSRPMTIHRVKVSFKDEQGEGSGVARSFYTALSEALLSGEKLPPLDTCHKGTVQRLRRALSSYRHKRRDHRDRESRRTLSADARPFYCSGTPSTDGDDTDGDPLPYHRQSLGERLYPRVHALKPALASRITGMLLELSPAQLLLLLASEDTLVQRVDEAVDVINEAKNLSKEPAEEESVASAPVSEQEESAEEHTPLFYQPGKAGYYSPRPGQYTDDRLNCYRNVGRIIGLCLLQNELCTLTFNRHVIKFILGRRVGWHDLAFFDPVLYESLRHLLALAESPDAEQKFHTLDLTFNIHLTPEEGGALVDLMRGGKDVAVTASNVQEYVRLYADYRMVTSTKRALQSMREGVLDVIPSSSLECLTAEDFRLLLNGCGEISVQQLMSYTSFNDETGGAGAEKLLKFKKWFWSIVEKMSNTERQDLVYFWTSSPALPASEEGFQPKPSVTVKPAHDHQLPTANTCISRLYMPLYSSRAILKSKLLLAIKTKTFGFV

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80TP3	E3 ubiquitin-protein ligase UBR5 OS=Mus musculus OX=10090 GN=Ubr5 PE=1 SV=2
O95071	E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens OX=9606 GN=UBR5 PE=1 SV=2
Q62671	E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus OX=10116 GN=Ubr5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002381 (this species only)
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|UBR-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00658 all species →	PABP	Poly-adenylate binding protein, unique domain	Family	Interproscan
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF11547 all species →	E3_UbLigase_EDD	E3 ubiquitin ligase EDD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003126 all species →	Domain	Zinc finger, UBR-type	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR002004 all species →	Domain	Polyadenylate-binding protein/Hyperplastic disc protein	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR024725 all species →	Domain	E3 ubiquitin-protein ligase UBR5, ubiquitin-associated domain	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR047503 all species →	Domain	E3 ubiquitin-protein ligase UBR5, UBR-box	Interproscan
IPR036053 all species →	Homologous_superfamily	PABC (PABP) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46276 all species →	E3 UBIQUITIN-PROTEIN LIGASE UBR5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0034450 all species →	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0090263 all species →	Biological Process	positive regulation of canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10593	EDD1, UBR5; E3 ubiquitin-protein ligase EDD1	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032229995.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

45TPM > 0

16Conditions

17.2Max TPM

8.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	9.86	12.69
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	5.62	7.50
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	5.97	6.99
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	6.61	9.05
whole 6 week old aboral regenerate · regenerate uncut	3	3	4.30	5.58
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	7.54	13.02
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	5.42	8.76
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	10.46	11.29
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	9.76	11.65
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	10.62	11.31
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	7.39	8.58
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	11.68	16.20
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	9.08	9.86
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	13.37	17.23
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	7.42	8.75
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	5.19	8.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.69
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.29
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	7.61
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.50
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	5.03
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.33
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.99
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.54
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.37
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.05
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.47
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.31
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.58
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.13
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.19
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	13.02
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.59
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.76
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.50
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.29
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	10.97
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.11
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	11.65
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	8.91
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	8.73
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	11.31
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.50
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.04
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.58
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.39
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.21
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	16.20
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.82
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.02
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.86
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.17
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	8.22
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	17.23
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	12.98
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	9.91
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.75
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.24
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.25
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	8.63
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	6.94
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.