Detailed information of XP_032230241.2 in Nematostella vectensis

Genomic Location: NC_064038.1:8211353...8225371
NR annotation: XP_032230241.2, uncharacterized protein LOC5505979 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007645 (this species only)

 Pfam domain
No Pfam domain signature was detected for XP_032230241.2. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR011989
all species →
Homologous_superfamilyArmadillo-like helicalInterproscan
IPR042359
all species →
FamilyTelomere repeats-binding bouquet formation protein 1Interproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14014
all species →
TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007129
all species →
Biological Processhomologous chromosome pairing at meiosisInterproscan
GO:0070197
all species →
Biological Processmeiotic attachment of telomere to nuclear envelopeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25749TERB1; telomere repeats-binding bouquet formation protein 1-DNA replication proteinsko03032deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_032230241.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
5TPM > 0
16Conditions
0.1Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole 6 week old aboral regenerate · regenerate 96hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 144hpa 3 2 0.07 0.10
whole 6 week old aboral regenerate · regenerate 0hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 2hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate uncut 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 4hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 120hpa 3 1 0.03 0.08
whole 6 week old aboral regenerate · regenerate 36hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 24hpa 3 1 0.02 0.06
whole 6 week old aboral regenerate · regenerate 20hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 16hpa 3 1 0.03 0.08
whole 6 week old aboral regenerate · regenerate 72hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 60hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 48hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 8hpa 3 0 0.00 0.00
whole 6 week old aboral regenerate · regenerate 12hpa 3 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP