Genomic Location: NC_064034.1:3075754...3080583
NR annotation: XP_032230522.2, zinc transporter 1 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC116614053 |
| Transcript |
| rna-XM_032374631.2 |
| Protein |
| XP_032230522.2 |
| UniProt accession | Description |
|---|---|
| Q4R6K2 | Proton-coupled zinc antiporter SLC30A1 OS=Macaca fascicularis OX=9541 GN=SLC30A1 PE=2 SV=1 |
| Q60738 | Proton-coupled zinc antiporter SLC30A1 OS=Mus musculus OX=10090 GN=Slc30a1 PE=1 SV=1 |
| Q9Y6M5 | Proton-coupled zinc antiporter SLC30A1 OS=Homo sapiens OX=9606 GN=SLC30A1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002043 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01545 all species → | Cation_efflux | Cation efflux family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002524 all species → | Family | Cation efflux protein | Interproscan |
| IPR036837 all species → | Homologous_superfamily | Cation efflux protein, cytoplasmic domain superfamily | Interproscan |
| IPR027469 all species → | Homologous_superfamily | Cation efflux transmembrane domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45820 all species → | FI23527P1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006812 all species → | Biological Process | monoatomic cation transport | Interproscan |
| GO:0008324 all species → | Molecular Function | monoatomic cation transmembrane transporter activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0005385 all species → | Molecular Function | zinc ion transmembrane transporter activity | Interproscan |
| GO:0006882 all species → | Biological Process | intracellular zinc ion homeostasis | Interproscan |
| GO:0010312 all species → | Biological Process | detoxification of zinc ion | Interproscan |
| GO:0016021 all species → | Cellular Component | membrane | Interproscan |
| GO:0071577 all species → | Biological Process | zinc ion transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14688 | SLC30A1, ZNT1; solute carrier family 30 (zinc transporter), member 1 | - | Transporters | ko02000 | deepkoala |
Transcript abundance of XP_032230522.2 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
